ID A0A061GRQ7_THECC Unreviewed; 741 AA.
AC A0A061GRQ7;
DT 03-SEP-2014, integrated into UniProtKB/TrEMBL.
DT 03-SEP-2014, sequence version 1.
DT 27-MAR-2024, entry version 41.
DE SubName: Full=RNA helicase, ATP-dependent, SK12/DOB1 protein isoform 3 {ECO:0000313|EMBL:EOY32156.1};
GN ORFNames=TCM_039723 {ECO:0000313|EMBL:EOY32156.1};
OS Theobroma cacao (Cacao) (Cocoa).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma.
OX NCBI_TaxID=3641 {ECO:0000313|EMBL:EOY32156.1, ECO:0000313|Proteomes:UP000026915};
RN [1] {ECO:0000313|EMBL:EOY32156.1, ECO:0000313|Proteomes:UP000026915}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Matina 1-6 {ECO:0000313|Proteomes:UP000026915};
RX PubMed=23731509; DOI=10.1186/gb-2013-14-6-r53;
RA Motamayor J.C., Mockaitis K., Schmutz J., Haiminen N., Iii D.L.,
RA Cornejo O., Findley S.D., Zheng P., Utro F., Royaert S., Saski C.,
RA Jenkins J., Podicheti R., Zhao M., Scheffler B.E., Stack J.C., Feltus F.A.,
RA Mustiga G.M., Amores F., Phillips W., Marelli J.P., May G.D., Shapiro H.,
RA Ma J., Bustamante C.D., Schnell R.J., Main D., Gilbert D., Parida L.,
RA Kuhn D.N.;
RT "The genome sequence of the most widely cultivated cacao type and its use
RT to identify candidate genes regulating pod color.";
RL Genome Biol. 14:R53.1-R53.24(2013).
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DR EMBL; CM001887; EOY32156.1; -; Genomic_DNA.
DR AlphaFoldDB; A0A061GRQ7; -.
DR EnsemblPlants; EOY32156; EOY32156; TCM_039723.
DR Gramene; EOY32156; EOY32156; TCM_039723.
DR HOGENOM; CLU_002902_0_0_1; -.
DR Proteomes; UP000026915; Chromosome 9.
DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-KW.
DR GO; GO:0016787; F:hydrolase activity; IEA:UniProtKB-KW.
DR GO; GO:0003723; F:RNA binding; IEA:InterPro.
DR GO; GO:0003724; F:RNA helicase activity; IEA:InterPro.
DR GO; GO:0006401; P:RNA catabolic process; IEA:InterPro.
DR CDD; cd18024; DEXHc_Mtr4-like; 1.
DR CDD; cd13154; KOW_Mtr4; 1.
DR CDD; cd18795; SF2_C_Ski2; 1.
DR Gene3D; 2.40.30.300; -; 1.
DR Gene3D; 3.40.50.300; P-loop containing nucleotide triphosphate hydrolases; 2.
DR InterPro; IPR011545; DEAD/DEAH_box_helicase_dom.
DR InterPro; IPR014001; Helicase_ATP-bd.
DR InterPro; IPR001650; Helicase_C.
DR InterPro; IPR048392; MTR4-like_stalk.
DR InterPro; IPR025696; MTR4_beta-barrel.
DR InterPro; IPR027417; P-loop_NTPase.
DR InterPro; IPR016438; SKI2-like.
DR PANTHER; PTHR12131; ATP-DEPENDENT RNA AND DNA HELICASE; 1.
DR PANTHER; PTHR12131:SF32; DEXH-BOX ATP-DEPENDENT RNA HELICASE DEXH10; 1.
DR Pfam; PF00270; DEAD; 1.
DR Pfam; PF00271; Helicase_C; 1.
DR Pfam; PF21408; MTR4-like_stalk; 1.
DR Pfam; PF13234; MTR4_beta-barrel; 1.
DR PIRSF; PIRSF005198; Antiviral_helicase_SKI2; 1.
DR SMART; SM00487; DEXDc; 1.
DR SMART; SM00490; HELICc; 1.
DR SUPFAM; SSF52540; P-loop containing nucleoside triphosphate hydrolases; 1.
DR PROSITE; PS51192; HELICASE_ATP_BIND_1; 1.
DR PROSITE; PS51194; HELICASE_CTER; 1.
PE 4: Predicted;
KW ATP-binding {ECO:0000256|ARBA:ARBA00022840};
KW Coiled coil {ECO:0000256|SAM:Coils};
KW Helicase {ECO:0000256|ARBA:ARBA00022806, ECO:0000313|EMBL:EOY32156.1};
KW Hydrolase {ECO:0000256|ARBA:ARBA00022801};
KW Nucleotide-binding {ECO:0000256|ARBA:ARBA00022741};
KW Reference proteome {ECO:0000313|Proteomes:UP000026915}.
FT DOMAIN 85..241
FT /note="Helicase ATP-binding"
FT /evidence="ECO:0000259|PROSITE:PS51192"
FT DOMAIN 318..519
FT /note="Helicase C-terminal"
FT /evidence="ECO:0000259|PROSITE:PS51194"
FT REGION 1..34
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 291..314
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COILED 566..593
FT /evidence="ECO:0000256|SAM:Coils"
FT COMPBIAS 1..19
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 291..311
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 741 AA; 82798 MW; AF16C11EFCB912CE CRC64;
MEEEPAALGK RKSPEKPHVT ETPSQESASK RRSLARTCVH EVAVPSGYTS IKDESIHGTL
SNPVYNGDMA KTYKFELDPF QRVSVACLER NESVLVSAHT SAGKTAVAEY AIAMAFRDKQ
RVIYTSPLKA LSNQKYRELH HEFQDVGLMT GDVTLSPNAS CLVMTTEILR GMLYRGSEVL
KEVAWVIFDE IHYMKDRERG VVWEESIIFL PPAIKMVFLS ATMSNATEFV EWICHLHKQP
CHVVYTDFRP TPLQHYVFPM GGSGLYLVVD ENEQLREDNF MKLQDSFIKQ RPGDLNKSAN
GKSSGRSAKG GSASGGSDIY KIVKMIMERK FHPVIVFSFS RRECEYHAMS MSKLDFNTQE
EKDDVEQVFR NAVLCLNEED RCLPAIELML PLLMRGIAVH HSGLLPVIKE LVELLFQEGL
IKALFATETF AMGLNMPAKT VVFTSVKKWD GDSHRYIGSG EYIQMSGRAG RRGKDERGIC
IIMIDEQMEM NTLKDMVLGK PAPLVSTFRL SYYSILNLMS RAEGQITAEH VIRNSFHQFQ
YEKALPDIGK KVSKLEQEAA LLDASGEAEV AEYHKLKLEI AQLEKKLMSE ITRPERILYY
LDPGRLIKVR EGSTDWGWGV VVNVVKRPSA GLGALPARGG GYIVDTLLHC SPGSSENGAR
PKPCPPCPAE KGEMHVVPVQ LPLVSALSKI RIFIPPDLRP PEARQSILLA VQELGTRFPQ
GLPKLNPVTI ACTTLTFSTS A
//
