ID A0A061GXA3_THECC Unreviewed; 1441 AA.
AC A0A061GXA3;
DT 03-SEP-2014, integrated into UniProtKB/TrEMBL.
DT 03-SEP-2014, sequence version 1.
DT 27-MAR-2024, entry version 56.
DE SubName: Full=RNA helicase, ATP-dependent, SK12/DOB1 protein isoform 1 {ECO:0000313|EMBL:EOY33817.1};
GN ORFNames=TCM_041685 {ECO:0000313|EMBL:EOY33817.1};
OS Theobroma cacao (Cacao) (Cocoa).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma.
OX NCBI_TaxID=3641 {ECO:0000313|EMBL:EOY33817.1, ECO:0000313|Proteomes:UP000026915};
RN [1] {ECO:0000313|EMBL:EOY33817.1, ECO:0000313|Proteomes:UP000026915}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Matina 1-6 {ECO:0000313|Proteomes:UP000026915};
RX PubMed=23731509; DOI=10.1186/gb-2013-14-6-r53;
RA Motamayor J.C., Mockaitis K., Schmutz J., Haiminen N., Iii D.L.,
RA Cornejo O., Findley S.D., Zheng P., Utro F., Royaert S., Saski C.,
RA Jenkins J., Podicheti R., Zhao M., Scheffler B.E., Stack J.C., Feltus F.A.,
RA Mustiga G.M., Amores F., Phillips W., Marelli J.P., May G.D., Shapiro H.,
RA Ma J., Bustamante C.D., Schnell R.J., Main D., Gilbert D., Parida L.,
RA Kuhn D.N.;
RT "The genome sequence of the most widely cultivated cacao type and its use
RT to identify candidate genes regulating pod color.";
RL Genome Biol. 14:R53.1-R53.24(2013).
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DR EMBL; CM001887; EOY33817.1; -; Genomic_DNA.
DR STRING; 3641.A0A061GXA3; -.
DR EnsemblPlants; EOY33817; EOY33817; TCM_041685.
DR Gramene; EOY33817; EOY33817; TCM_041685.
DR eggNOG; KOG0947; Eukaryota.
DR InParanoid; A0A061GXA3; -.
DR OMA; CGSDITR; -.
DR Proteomes; UP000026915; Chromosome 9.
DR GO; GO:0055087; C:Ski complex; IBA:GO_Central.
DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-KW.
DR GO; GO:0016787; F:hydrolase activity; IEA:UniProtKB-KW.
DR GO; GO:0003723; F:RNA binding; IEA:InterPro.
DR GO; GO:0003724; F:RNA helicase activity; IBA:GO_Central.
DR GO; GO:0070478; P:nuclear-transcribed mRNA catabolic process, 3'-5' exonucleolytic nonsense-mediated decay; IBA:GO_Central.
DR GO; GO:1904278; P:positive regulation of wax biosynthetic process; IEA:EnsemblPlants.
DR GO; GO:0016441; P:post-transcriptional gene silencing; IEA:EnsemblPlants.
DR GO; GO:0006813; P:potassium ion transport; IEA:EnsemblPlants.
DR GO; GO:0035864; P:response to potassium ion; IEA:EnsemblPlants.
DR GO; GO:0000292; P:RNA fragment catabolic process; IEA:EnsemblPlants.
DR CDD; cd18795; SF2_C_Ski2; 1.
DR Gene3D; 1.10.3380.30; -; 2.
DR Gene3D; 3.40.50.300; P-loop containing nucleotide triphosphate hydrolases; 2.
DR InterPro; IPR011545; DEAD/DEAH_box_helicase_dom.
DR InterPro; IPR014001; Helicase_ATP-bd.
DR InterPro; IPR001650; Helicase_C.
DR InterPro; IPR048392; MTR4-like_stalk.
DR InterPro; IPR025696; MTR4_beta-barrel.
DR InterPro; IPR027417; P-loop_NTPase.
DR InterPro; IPR016438; SKI2-like.
DR InterPro; IPR012961; Ski2/MTR4_C.
DR InterPro; IPR040801; Ski2_N.
DR PANTHER; PTHR12131; ATP-DEPENDENT RNA AND DNA HELICASE; 1.
DR PANTHER; PTHR12131:SF24; DEXH-BOX ATP-DEPENDENT RNA HELICASE DEXH11; 1.
DR Pfam; PF00270; DEAD; 1.
DR Pfam; PF08148; DSHCT; 1.
DR Pfam; PF00271; Helicase_C; 1.
DR Pfam; PF21408; MTR4-like_stalk; 1.
DR Pfam; PF13234; MTR4_beta-barrel; 1.
DR Pfam; PF17911; Ski2_N; 1.
DR PIRSF; PIRSF005198; Antiviral_helicase_SKI2; 1.
DR SMART; SM00487; DEXDc; 1.
DR SMART; SM01142; DSHCT; 1.
DR SMART; SM00490; HELICc; 1.
DR SUPFAM; SSF52540; P-loop containing nucleoside triphosphate hydrolases; 1.
DR PROSITE; PS51192; HELICASE_ATP_BIND_1; 1.
DR PROSITE; PS51194; HELICASE_CTER; 1.
PE 4: Predicted;
KW ATP-binding {ECO:0000256|ARBA:ARBA00022840};
KW Coiled coil {ECO:0000256|SAM:Coils};
KW Helicase {ECO:0000256|ARBA:ARBA00022806, ECO:0000313|EMBL:EOY33817.1};
KW Hydrolase {ECO:0000256|ARBA:ARBA00022801};
KW Nucleotide-binding {ECO:0000256|ARBA:ARBA00022741};
KW Reference proteome {ECO:0000313|Proteomes:UP000026915};
KW RNA-binding {ECO:0000256|ARBA:ARBA00022884}.
FT DOMAIN 455..610
FT /note="Helicase ATP-binding"
FT /evidence="ECO:0000259|PROSITE:PS51192"
FT DOMAIN 763..928
FT /note="Helicase C-terminal"
FT /evidence="ECO:0000259|PROSITE:PS51194"
FT REGION 64..87
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 354..379
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 669..719
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COILED 1214..1241
FT /evidence="ECO:0000256|SAM:Coils"
FT COMPBIAS 67..84
FT /note="Basic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 691..719
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 1441 AA; 161240 MW; 59B752A703CF0236 CRC64;
MYVVKVEALV VQIVDTIGSL ARLEQEVASQ DIHTASKVPA KQAPRSAKCT VALRKLYFQL
HSKPAKKLSN RNQKPNRHTK RSIPGTSRYR LMKPIQAANG FSFRVGFSGH SGHLRVEPLY
TEERDNPIKT LPDFVLPPAF PRETPESIKE HIKEKYLLPR LDDEAFSPEK AGRQWDFDWF
ERVKIPLEPS LPRTVMVPVW ELPFRRCKGG SVEGKWEPNS LQVDVSELIV GGQASGSFPH
TVGGAAKDFV RGSINNRPFR PGGLEDQSVE RILPDGACNG EWVSEVLNGG PVQTIPPGFK
QGLNLGDLTA HPCLWNVYKD RTSLNNTSVE KVSELSVQFD DLFKKAWEED VTEFEKDGHS
TESDSVKSEA ESNQADVLNS LDTGSSALDE ILSVEAERLD EKSDGGGQQQ KETIYWQAWA
VSGGSEGIAD HFYELVPDMA IEYPFELDTF QKEAIYYLEK GESVFVAAHT SAGKTVVAEY
AFALASKHCT RAVYTAPIKT ISNQKYRDFC GKFDVGLLTG DVSLRPEASC LIMTTEILRS
MLYRGADIIR DIEWVIFDEV HYVNDVERGV VWEEVIIMLP KHINIILLSA TVPNTIEFAD
WIGRTKQKKI RVTGTTKRPV PLEHCLFYSG ELYKICESET FISLGLKAAK DAYKKKNSNA
ISGGTASYTG SSAVHDGARG QKREISNRGK QNKHSGPQNL GHYSGTGWGN QGSGGGQNSW
GSRRSAWLML IDKLSKQSLL PVVIFGFSKN QCDKSADSIS GTDLTSSSEK SEIRVFCDKA
FSRLKGSDRN LPQVVRVQNL LCRGIGVHHA GLLPIVKEVV EMLFCRGVIK VLFSTETFAM
GVNAPARTVV FDTLRKFDGK EFRQLLPGEY TQMAGRAGRR GLDKTGTVIV MCRDEIPEER
DLKHVITGTP TNLESQFRLT YIMILHLLRV EELKVEDMLK RSFSEFHAQK KLPEQQQRLL
RKLAQPKKTI ECIKGEPAIE EYYEMHAEAE EHYRQISNAV MQSPVAQQFL TVGRVVVVKS
QSAQDHLLGV VVKSPSANNK QYIVQVLKPD VPLMTQTPSS SSNLQDKRSA DFQQGYVLLP
KAKRGLEEDY RLSTGPRKGS GIINIKLPHH GAAAGVSFEV RETDNTEFLC ICNSKIKVEQ
VGILEYGSDT AFSNAVQQLL KLKSNGNKYP PALDPIKDLK LKDMDLVQKY YKWTHLLQKM
SENKCHECIK LEEHIKLARE IKKHKDEVNA LEFQLSNEAL QQMPEFQGRI DVLKEIGCID
EDHVVQLKGR VACEMNSGEE LICTECLFEN QLDDLEPEEA VALMSAFVFQ QKNTSEPSLT
SKLSQAKKRL YDTAIRLGNL QAGFKLQITP EEYAKENLKF GLVEVVYEWA KGTPFAEICE
LTDVPEGLIV RTIVRLDETC REFKSAAAIM GNSSLYKKME SASNAIKRDI VFAASLYITG
V
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