ID A0A068U3V0_COFCA Unreviewed; 1789 AA.
AC A0A068U3V0;
DT 01-OCT-2014, integrated into UniProtKB/TrEMBL.
DT 01-OCT-2014, sequence version 1.
DT 24-JAN-2024, entry version 33.
DE RecName: Full=Sister chromatid cohesion protein {ECO:0000256|RuleBase:RU364107};
GN ORFNames=GSCOC_T00039643001 {ECO:0000313|EMBL:CDP02288.1};
OS Coffea canephora (Robusta coffee).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex;
OC Bertiereae - Coffeeae clade; Coffeeae; Coffea.
OX NCBI_TaxID=49390 {ECO:0000313|EMBL:CDP02288.1, ECO:0000313|Proteomes:UP000295252};
RN [1] {ECO:0000313|Proteomes:UP000295252}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. DH200-94 {ECO:0000313|Proteomes:UP000295252};
RX PubMed=25190796; DOI=10.1126/science.1255274;
RA Denoeud F., Carretero-Paulet L., Dereeper A., Droc G., Guyot R.,
RA Pietrella M., Zheng C., Alberti A., Anthony F., Aprea G., Aury J.M.,
RA Bento P., Bernard M., Bocs S., Campa C., Cenci A., Combes M.C.,
RA Crouzillat D., Da Silva C., Daddiego L., De Bellis F., Dussert S.,
RA Garsmeur O., Gayraud T., Guignon V., Jahn K., Jamilloux V., Joet T.,
RA Labadie K., Lan T., Leclercq J., Lepelley M., Leroy T., Li L.T.,
RA Librado P., Lopez L., Munoz A., Noel B., Pallavicini A., Perrotta G.,
RA Poncet V., Pot D., Priyono X., Rigoreau M., Rouard M., Rozas J.,
RA Tranchant-Dubreuil C., VanBuren R., Zhang Q., Andrade A.C., Argout X.,
RA Bertrand B., de Kochko A., Graziosi G., Henry R.J., Jayarama X., Ming R.,
RA Nagai C., Rounsley S., Sankoff D., Giuliano G., Albert V.A., Wincker P.,
RA Lashermes P.;
RT "The coffee genome provides insight into the convergent evolution of
RT caffeine biosynthesis.";
RL Science 345:1181-1184(2014).
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|ARBA:ARBA00004123,
CC ECO:0000256|RuleBase:RU364107}.
CC -!- SIMILARITY: Belongs to the SCC2/Nipped-B family.
CC {ECO:0000256|ARBA:ARBA00009252, ECO:0000256|RuleBase:RU364107}.
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DR EMBL; HG739092; CDP02288.1; -; Genomic_DNA.
DR STRING; 49390.A0A068U3V0; -.
DR EnsemblPlants; CDP02288; CDP02288; GSCOC_T00039643001.
DR Gramene; CDP02288; CDP02288; GSCOC_T00039643001.
DR InParanoid; A0A068U3V0; -.
DR OMA; GSTDWPA; -.
DR PhylomeDB; A0A068U3V0; -.
DR Proteomes; UP000295252; Chromosome 7.
DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
DR GO; GO:0003682; F:chromatin binding; IEA:InterPro.
DR GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
DR GO; GO:0034508; P:centromere complex assembly; IEA:EnsemblPlants.
DR GO; GO:0009793; P:embryo development ending in seed dormancy; IEA:EnsemblPlants.
DR GO; GO:0051177; P:meiotic sister chromatid cohesion; IEA:EnsemblPlants.
DR GO; GO:0061780; P:mitotic cohesin loading; IEA:InterPro.
DR GO; GO:0010468; P:regulation of gene expression; IEA:InterPro.
DR CDD; cd15489; PHD_SF; 1.
DR Gene3D; 1.25.10.10; Leucine-rich Repeat Variant; 2.
DR Gene3D; 3.30.40.10; Zinc/RING finger domain, C3HC4 (zinc finger); 1.
DR InterPro; IPR011989; ARM-like.
DR InterPro; IPR016024; ARM-type_fold.
DR InterPro; IPR026003; Cohesin_HEAT.
DR InterPro; IPR024986; Nipped-B_C.
DR InterPro; IPR033031; Scc2/Nipped-B.
DR InterPro; IPR019786; Zinc_finger_PHD-type_CS.
DR InterPro; IPR011011; Znf_FYVE_PHD.
DR InterPro; IPR001965; Znf_PHD.
DR InterPro; IPR019787; Znf_PHD-finger.
DR InterPro; IPR013083; Znf_RING/FYVE/PHD.
DR PANTHER; PTHR21704:SF18; NIPPED-B-LIKE PROTEIN; 1.
DR PANTHER; PTHR21704; NIPPED-B-LIKE PROTEIN DELANGIN SCC2-RELATED; 1.
DR Pfam; PF12765; Cohesin_HEAT; 1.
DR Pfam; PF12830; Nipped-B_C; 1.
DR SMART; SM00249; PHD; 1.
DR SUPFAM; SSF48371; ARM repeat; 1.
DR SUPFAM; SSF57903; FYVE/PHD zinc finger; 1.
DR PROSITE; PS01359; ZF_PHD_1; 1.
DR PROSITE; PS50016; ZF_PHD_2; 1.
PE 3: Inferred from homology;
KW Cell cycle {ECO:0000256|ARBA:ARBA00023306, ECO:0000256|RuleBase:RU364107};
KW Metal-binding {ECO:0000256|ARBA:ARBA00022723};
KW Nucleus {ECO:0000256|ARBA:ARBA00023242, ECO:0000256|RuleBase:RU364107};
KW Reference proteome {ECO:0000313|Proteomes:UP000295252};
KW Repeat {ECO:0000256|ARBA:ARBA00022737, ECO:0000256|RuleBase:RU364107};
KW Zinc {ECO:0000256|ARBA:ARBA00022833};
KW Zinc-finger {ECO:0000256|ARBA:ARBA00022771, ECO:0000256|PROSITE-
KW ProRule:PRU00146}.
FT DOMAIN 664..714
FT /note="PHD-type"
FT /evidence="ECO:0000259|PROSITE:PS50016"
FT REGION 358..384
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 1595..1629
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 1733..1789
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 1789 AA; 199880 MW; 2103DC1FC8612903 CRC64;
MARPPTSGTG GIPRGISLSN SLHSEVAPCL PLPSLPVFCG ALDQELRLFD ELHSAASRSV
NRIDVVSQAG KIAQLLSNTD VSYLSIRGDV SSQPQGFVGH HDLYDEVLRY NSQAFDYISP
GPTNEPIPSG NLAESKPCEQ NLRDQVHRDN AGIGSNQHDV AGILKYQQGY DMSNDAINHS
RKPKVRKKGK DSILSSSTVP DAIEQQDAAI GGFSELLEGI CSRSEIFSDD RDEAEWLPLT
VGDLKTVVNE IISIRAKRIL HLVPIDILSR FLRVLDHQIH RAEGLSINGS EHSDSDVMTS
IYVALESIHA ALAIMAHTGM AKQLYKEEII ERIVEFSRHQ IMDIMSACDP AYRALHKPND
IGAPDDDEDE EIEGDYGSAS KKRRTTRNLK LRKSNPNKAS AVVNSILQKL CTIVGFLEDL
LSIERLSDSC ILQLIRTSFT TFLVDNIHLL QLKAISLISG IFHTYTQHRA YVMDEALQVL
LKLPFSKRVP RTYHLPDEEQ KQIQIITALL IQLIHCSANL PEVLRQSSSV PSLEVSLDTN
YPTKCHEAIT ESCCLFWSRV LQRLTGSKNQ DSSELKTMIE NLVVDLLVTL NLPEYPGSAP
ILEVLCVLLL QNAGPKSKDI SARSMAIDLL GTIASRLKHD AVRCRKEKFW IVHQLTSGES
SFVSSACCVC LNARNEKQLF ACQGCQRLYH VDCIGVGRNE VSTHSFYCQI CICKKQLLVL
KSYSESQSKD DEKKGHKLSG MSSDNFEVAN LEIVQQMLLN YLQDASSVDV HLFIRWFYIC
IWYKDDPSAQ QKFYYYLSRL RSKAILRDSS TVSTFLARDT VKKIALALGQ DNSFSRGFEK
ILQVLLASLR ENSPVIRAKA MRAVSIIVEA DPEVLRDKLV QTAVEGRFCD SAISVREAAL
ELVGRHIASH PDVGLQYFEK VAERIKDTGV SVRKRAIRII RDMCTSNPNF AEFTTACIDI
ISRVNDEESS IQDLVCKTFY EFWFEEPSGT QSHHFKDGSS VPLEVAKKTE QIVEMLRRVR
SYQLLVVVIK RNLALDFFPQ SAKAVGINPV SLASVRRRCE QMCKCLLEKI LLVTEMSSEE
GDVRMLPYVL LLHAFCVVDP MLCAPASDPS LFVVTLQPYL KSQTDTRVAA QLLESIIFVI
DSVLPMLRKL PPSVVEELEQ DLKQMIVRHS FLTVVHACIK CLCCVSKVMG KGAHVVELLI
QFFYKRLDAL GLDNKEQVGR SLFCLGLLIR YGSSLLTASA SSYKNIDVIS SLNVFKKYLQ
AEDFIIKARA LQALGYVLIA RPECMLEKDV GKILEATLSS STDARLKMQS LQNMYEYLLD
AESQMGADKA GNMEDICSTD DGHSVPVAAG AGDTNICGGI VQLYWDMILG RCLDVNEQVR
QSALKIVEVV LRQGLVHPIT CVPYLIALET DPQEANAKLA NHLLMNMNEK YPAFFESRLG
DGLQLSFVFM RCLNQNSSAH LDPKAVSKLS GNLKGKPDAS PFAYARLGIS RIYKLIRGNR
VSRNKFMASI VRKFDMPSWN DSVIPFLIYC TEILSLLPFT LPDEPLYLIY TINRVIQVRA
GILEANMKAF LHLLRGENQE IDGNGIIRPD PSTLAHESNV SEQIPEDLDG QSPSRYASKD
LGMPDITTGN SHGISGGDLQ KIQADCLAAG ALQLLLKLKR HLKIVYSLDD ARCQAFSPNE
PPKPGDFLSR QNMPFNISDV TIDLPSNYED LLQRYQEFKN ALKEDTVDYS TYTANIKRKR
PPPRRGGRSG RTMGGDDEDD ENDEDWGSAM RRLSNSGRKA YNSRSRQRM
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