ID A0A068UP42_COFCA Unreviewed; 607 AA.
AC A0A068UP42;
DT 01-OCT-2014, integrated into UniProtKB/TrEMBL.
DT 01-OCT-2014, sequence version 1.
DT 27-MAR-2024, entry version 25.
DE RecName: Full=poly(A)-specific ribonuclease {ECO:0000256|ARBA:ARBA00012161};
DE EC=3.1.13.4 {ECO:0000256|ARBA:ARBA00012161};
GN ORFNames=GSCOC_T00030798001 {ECO:0000313|EMBL:CDP10171.1};
OS Coffea canephora (Robusta coffee).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex;
OC Bertiereae - Coffeeae clade; Coffeeae; Coffea.
OX NCBI_TaxID=49390 {ECO:0000313|EMBL:CDP10171.1, ECO:0000313|Proteomes:UP000295252};
RN [1] {ECO:0000313|Proteomes:UP000295252}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. DH200-94 {ECO:0000313|Proteomes:UP000295252};
RX PubMed=25190796; DOI=10.1126/science.1255274;
RA Denoeud F., Carretero-Paulet L., Dereeper A., Droc G., Guyot R.,
RA Pietrella M., Zheng C., Alberti A., Anthony F., Aprea G., Aury J.M.,
RA Bento P., Bernard M., Bocs S., Campa C., Cenci A., Combes M.C.,
RA Crouzillat D., Da Silva C., Daddiego L., De Bellis F., Dussert S.,
RA Garsmeur O., Gayraud T., Guignon V., Jahn K., Jamilloux V., Joet T.,
RA Labadie K., Lan T., Leclercq J., Lepelley M., Leroy T., Li L.T.,
RA Librado P., Lopez L., Munoz A., Noel B., Pallavicini A., Perrotta G.,
RA Poncet V., Pot D., Priyono X., Rigoreau M., Rouard M., Rozas J.,
RA Tranchant-Dubreuil C., VanBuren R., Zhang Q., Andrade A.C., Argout X.,
RA Bertrand B., de Kochko A., Graziosi G., Henry R.J., Jayarama X., Ming R.,
RA Nagai C., Rounsley S., Sankoff D., Giuliano G., Albert V.A., Wincker P.,
RA Lashermes P.;
RT "The coffee genome provides insight into the convergent evolution of
RT caffeine biosynthesis.";
RL Science 345:1181-1184(2014).
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DR EMBL; HG739127; CDP10171.1; -; Genomic_DNA.
DR AlphaFoldDB; A0A068UP42; -.
DR STRING; 49390.A0A068UP42; -.
DR EnsemblPlants; CDP10171; CDP10171; GSCOC_T00030798001.
DR Gramene; CDP10171; CDP10171; GSCOC_T00030798001.
DR InParanoid; A0A068UP42; -.
DR OMA; GMYHFVV; -.
DR PhylomeDB; A0A068UP42; -.
DR Proteomes; UP000295252; Chromosome 6.
DR GO; GO:0003824; F:catalytic activity; IEA:InterPro.
DR GO; GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
DR CDD; cd09097; Deadenylase_CCR4; 1.
DR Gene3D; 3.60.10.10; Endonuclease/exonuclease/phosphatase; 1.
DR InterPro; IPR036691; Endo/exonu/phosph_ase_sf.
DR InterPro; IPR005135; Endo/exonuclease/phosphatase.
DR PANTHER; PTHR12121; CARBON CATABOLITE REPRESSOR PROTEIN 4; 1.
DR PANTHER; PTHR12121:SF34; POLY(A)-SPECIFIC RIBONUCLEASE; 1.
DR Pfam; PF03372; Exo_endo_phos; 1.
DR SUPFAM; SSF56219; DNase I-like; 1.
PE 4: Predicted;
KW Reference proteome {ECO:0000313|Proteomes:UP000295252};
KW Repeat {ECO:0000256|ARBA:ARBA00022737};
KW RNA-binding {ECO:0000256|ARBA:ARBA00022884}.
FT DOMAIN 255..592
FT /note="Endonuclease/exonuclease/phosphatase"
FT /evidence="ECO:0000259|Pfam:PF03372"
SQ SEQUENCE 607 AA; 67430 MW; 07AD26965CDC4A11 CRC64;
MLSVLRVHLP SDIPIVGCEL TPYVLVKRPD KSVITEDVPE STPLDGYFLR YKWYRIQSDR
KVAICSVHPS EQATLQCLGC VKAKIPISKS YHCSPKCFSD AWQHHRVLHE RAASAVNENG
NEEEEIFGRF NGSGSGVINT NLTGTQANSS LANGATALYP AAVTQRGGET WFEVGRFKTY
TPTADDIGHV LKFECVVVDA ESKQPVGHPS TLHTSRVIPA PSPTPRRLIP VSGVEMPGHL
DVDGRVSSSG TFTVLSYNIL SDSYAANDLY SYCPSWALSW AYRRQNLLRE IVGYRADIVC
LQEVQCDHFE EFFAPELDKH GYQALYKRKT AEVFNGNIYS NDGCATFFRR DRFSHVKKYE
VEFNKAAQSL TDALVPSTQK KTALGRLIKD NIALIVVLEA KFSNQGIDNP GKRQLVCVAN
THVNVQQDLK DVKLWQVHTL LKGLEKIAAS ADIPMLVCGD FNSVPGSAPH ALLAMGKVDP
MHSDLAVDPL GILRPATKLT HQLPLVSAYS SFGRAAGIGF EQQRRRLDLT TNEPLFTNCT
RDFIGTHDYI FYSGMLKVNS DSLTVESLLE LLDEDGLRKD TALPSPEWSS DHIALLAEFR
CKPRTRR
//
