ID A0A068VC86_COFCA Unreviewed; 1333 AA.
AC A0A068VC86;
DT 01-OCT-2014, integrated into UniProtKB/TrEMBL.
DT 01-OCT-2014, sequence version 1.
DT 27-MAR-2024, entry version 29.
DE SubName: Full=DH200=94 genomic scaffold, scaffold_229 {ECO:0000313|EMBL:CDP18351.1};
GN ORFNames=GSCOC_T00009502001 {ECO:0000313|EMBL:CDP18351.1};
OS Coffea canephora (Robusta coffee).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex;
OC Bertiereae - Coffeeae clade; Coffeeae; Coffea.
OX NCBI_TaxID=49390 {ECO:0000313|EMBL:CDP18351.1, ECO:0000313|Proteomes:UP000295252};
RN [1] {ECO:0000313|Proteomes:UP000295252}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. DH200-94 {ECO:0000313|Proteomes:UP000295252};
RX PubMed=25190796; DOI=10.1126/science.1255274;
RA Denoeud F., Carretero-Paulet L., Dereeper A., Droc G., Guyot R.,
RA Pietrella M., Zheng C., Alberti A., Anthony F., Aprea G., Aury J.M.,
RA Bento P., Bernard M., Bocs S., Campa C., Cenci A., Combes M.C.,
RA Crouzillat D., Da Silva C., Daddiego L., De Bellis F., Dussert S.,
RA Garsmeur O., Gayraud T., Guignon V., Jahn K., Jamilloux V., Joet T.,
RA Labadie K., Lan T., Leclercq J., Lepelley M., Leroy T., Li L.T.,
RA Librado P., Lopez L., Munoz A., Noel B., Pallavicini A., Perrotta G.,
RA Poncet V., Pot D., Priyono X., Rigoreau M., Rouard M., Rozas J.,
RA Tranchant-Dubreuil C., VanBuren R., Zhang Q., Andrade A.C., Argout X.,
RA Bertrand B., de Kochko A., Graziosi G., Henry R.J., Jayarama X., Ming R.,
RA Nagai C., Rounsley S., Sankoff D., Giuliano G., Albert V.A., Wincker P.,
RA Lashermes P.;
RT "The coffee genome provides insight into the convergent evolution of
RT caffeine biosynthesis.";
RL Science 345:1181-1184(2014).
CC -!- SIMILARITY: Belongs to the nucleoporin Nup133 family.
CC {ECO:0000256|ARBA:ARBA00005569}.
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DR EMBL; HG739313; CDP18351.1; -; Genomic_DNA.
DR STRING; 49390.A0A068VC86; -.
DR EnsemblPlants; CDP18351; CDP18351; GSCOC_T00009502001.
DR Gramene; CDP18351; CDP18351; GSCOC_T00009502001.
DR InParanoid; A0A068VC86; -.
DR OMA; HKDWYPS; -.
DR PhylomeDB; A0A068VC86; -.
DR Proteomes; UP000295252; Unassembled WGS sequence.
DR GO; GO:0005643; C:nuclear pore; IEA:UniProt.
DR GO; GO:0017056; F:structural constituent of nuclear pore; IEA:InterPro.
DR Gene3D; 1.20.58.1380; -; 1.
DR Gene3D; 2.130.10.10; YVTN repeat-like/Quinoprotein amine dehydrogenase; 1.
DR InterPro; IPR014908; Nucleoporin_Nup133/Nup155_N.
DR InterPro; IPR037624; Nup133-like.
DR InterPro; IPR015943; WD40/YVTN_repeat-like_dom_sf.
DR PANTHER; PTHR13405; NUCLEAR PORE COMPLEX PROTEIN NUP133; 1.
DR PANTHER; PTHR13405:SF11; NUCLEAR PORE COMPLEX PROTEIN NUP133; 1.
DR Pfam; PF08801; Nucleoporin_N; 1.
DR SUPFAM; SSF117289; Nucleoporin domain; 1.
PE 3: Inferred from homology;
KW Nucleus {ECO:0000256|ARBA:ARBA00023242};
KW Reference proteome {ECO:0000313|Proteomes:UP000295252};
KW Transport {ECO:0000256|ARBA:ARBA00022448}.
FT DOMAIN 93..550
FT /note="Nucleoporin Nup133/Nup155-like N-terminal"
FT /evidence="ECO:0000259|Pfam:PF08801"
FT REGION 1..56
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 563..603
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 15..49
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 570..584
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 1333 AA; 150009 MW; BFD78D68FD0952AE CRC64;
MFSPGRRKSS YGSAAAARKD QNATEKSNDS SLASPKTPLQ DSNVIPNRPA TGTPAPWASR
LSVLARIPPV KRNEKGDDGD LVQPVYVGEF PLAVRDEQQA ALVQKQYPGE MSISGGMDKE
TSLAWVICRD RLFVWNYFSP IASRNCVVLD LPSSTFETRD SSRNAFNSNT WLVCILNWDC
LNRNSDKLIS QCNSAGIIVC NRRSRTLVYW PEIYSESRSA PVLSSASVEE LEVLLWPGDG
KANYNKQQQR TKQGSSITGL SSLNSLIATP VLGANHVCVS LACSSNGDLW QFFCSPFAIE
RKKIFQDMLG TASSGGDGSH LVGSKGYPRS LTWLLFNSFS ETKRQFLLLT DREIQCFCVK
LTPDYNVSKL WSHEIVGTDG DLGIQKDLAG QKRIWPLDLQ IDNDGKVITI LIAIFCKDRI
TSSSYTEYSL LTMQYRSGLS ISTENVKPTS ERVLEKKAPI QVIIPKARVE DEEFLFSMRL
KIGGKPAGSV IILSGDGTAT VSHYWRNSTR LYQFDLPYDA GKVFDAAVFP SSDDGEDGAW
AVLTEKAGIW AIPERAILIG GVEPPERSLS RKGSSNERSS QEERKNISFS GNIPPRRASS
EAWDAVDRHR APITGIAHRN AQDEESEALL NQLFNDFLLS GQVEGSVDKL KYSGAFERDG
ETNVFTRMSK SIVDTLAKHW TTTRGVEIVA LSIVSTQLIE KQQKHQKHLQ FLALSKCHEE
LCTKQRQSLQ IILEHGEKLA GMLQLRELQN MICQSHTNGV SSSYSRSETQ TSGALWDLIQ
LVGERARRRT VLLMDRENAE VFYSKVSDIE DLFYCLEKQL DSMIGEDMPF TVQFQRACEI
SNACVSILQT AMHYRSEHHL WYPPPDGLTP WYCQTVVRSG IWSIASFMLQ LINETFRLDD
AKKLDFYSHL EVLSEVLLDA YSGAITAKSE RNEEQKGLLD EYWKRRDALL DSLHKQVKGF
FQAKLQDPDG GTEVQNDEVI RKLSSKLLHI AKRHEGYQTL WSICCDLNDS ELLKNLMHES
MGPRGGFSNF VFKQLYDSKQ YSRLMRLGEE FQEELAIFLK QHQDLRWLHE VFLNQFAAAS
ETLHVVGLSQ EDSPGLANEE THFCGTTNRT TLAERKHFLN LSKIAAMAGR NVDCPTKVKR
IEADLNILKL QEEILGLLPD SDEKHNIGNR LLPPVDLIEL CLKNQNRLLA LRAFDVFAWT
SFFFLKCNSS LLEECWRNAA NQDDWERIYQ LSVTEGWSDE ETLHSLQETV LFQASTICYG
PEAKTFDGGF DEVLPLRQEN LEVEYVKDAS SSVEAILMQH KDFPDTGKLM LTAIMLGSAH
AGTVINESCF PME
//
