ID A0A072TWI4_MEDTR Unreviewed; 628 AA.
AC A0A072TWI4;
DT 01-OCT-2014, integrated into UniProtKB/TrEMBL.
DT 01-OCT-2014, sequence version 1.
DT 27-MAR-2024, entry version 42.
DE SubName: Full=PPR containing plant protein {ECO:0000313|EMBL:KEH21802.1};
DE SubName: Full=Putative pentatricopeptide {ECO:0000313|EMBL:RHN44561.1};
GN Name=25497640 {ECO:0000313|EnsemblPlants:KEH21802};
GN OrderedLocusNames=MTR_7g018240 {ECO:0000313|EMBL:KEH21802.1};
GN ORFNames=MtrunA17_Chr7g0220751 {ECO:0000313|EMBL:RHN44561.1};
OS Medicago truncatula (Barrel medic) (Medicago tribuloides).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade;
OC NPAAA clade; Hologalegina; IRL clade; Trifolieae; Medicago.
OX NCBI_TaxID=3880 {ECO:0000313|EMBL:KEH21802.1, ECO:0000313|Proteomes:UP000002051};
RN [1] {ECO:0000313|EMBL:KEH21802.1, ECO:0000313|Proteomes:UP000002051}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=A17 {ECO:0000313|EMBL:KEH21802.1}, and cv. Jemalong A17
RC {ECO:0000313|EnsemblPlants:KEH21802,
RC ECO:0000313|Proteomes:UP000002051};
RX PubMed=22089132; DOI=10.1038/nature10625;
RA Young N.D., Debelle F., Oldroyd G.E., Geurts R., Cannon S.B., Udvardi M.K.,
RA Benedito V.A., Mayer K.F., Gouzy J., Schoof H., Van de Peer Y., Proost S.,
RA Cook D.R., Meyers B.C., Spannagl M., Cheung F., De Mita S.,
RA Krishnakumar V., Gundlach H., Zhou S., Mudge J., Bharti A.K., Murray J.D.,
RA Naoumkina M.A., Rosen B., Silverstein K.A., Tang H., Rombauts S.,
RA Zhao P.X., Zhou P., Barbe V., Bardou P., Bechner M., Bellec A., Berger A.,
RA Berges H., Bidwell S., Bisseling T., Choisne N., Couloux A., Denny R.,
RA Deshpande S., Dai X., Doyle J.J., Dudez A.M., Farmer A.D., Fouteau S.,
RA Franken C., Gibelin C., Gish J., Goldstein S., Gonzalez A.J., Green P.J.,
RA Hallab A., Hartog M., Hua A., Humphray S.J., Jeong D.H., Jing Y.,
RA Jocker A., Kenton S.M., Kim D.J., Klee K., Lai H., Lang C., Lin S.,
RA Macmil S.L., Magdelenat G., Matthews L., McCorrison J., Monaghan E.L.,
RA Mun J.H., Najar F.Z., Nicholson C., Noirot C., O'Bleness M., Paule C.R.,
RA Poulain J., Prion F., Qin B., Qu C., Retzel E.F., Riddle C., Sallet E.,
RA Samain S., Samson N., Sanders I., Saurat O., Scarpelli C., Schiex T.,
RA Segurens B., Severin A.J., Sherrier D.J., Shi R., Sims S., Singer S.R.,
RA Sinharoy S., Sterck L., Viollet A., Wang B.B., Wang K., Wang M., Wang X.,
RA Warfsmann J., Weissenbach J., White D.D., White J.D., Wiley G.B.,
RA Wincker P., Xing Y., Yang L., Yao Z., Ying F., Zhai J., Zhou L., Zuber A.,
RA Denarie J., Dixon R.A., May G.D., Schwartz D.C., Rogers J., Quetier F.,
RA Town C.D., Roe B.A.;
RT "The Medicago genome provides insight into the evolution of rhizobial
RT symbioses.";
RL Nature 480:520-524(2011).
RN [2] {ECO:0000313|EMBL:KEH21802.1, ECO:0000313|Proteomes:UP000002051}
RP GENOME REANNOTATION.
RC STRAIN=A17 {ECO:0000313|EMBL:KEH21802.1}, and cv. Jemalong A17
RC {ECO:0000313|EnsemblPlants:KEH21802,
RC ECO:0000313|Proteomes:UP000002051};
RX PubMed=24767513; DOI=10.1186/1471-2164-15-312;
RA Tang H., Krishnakumar V., Bidwell S., Rosen B., Chan A., Zhou S.,
RA Gentzbittel L., Childs K.L., Yandell M., Gundlach H., Mayer K.F.,
RA Schwartz D.C., Town C.D.;
RT "An improved genome release (version Mt4.0) for the model legume Medicago
RT truncatula.";
RL BMC Genomics 15:312-312(2014).
RN [3] {ECO:0000313|EnsemblPlants:KEH21802}
RP IDENTIFICATION.
RC STRAIN=cv. Jemalong A17 {ECO:0000313|EnsemblPlants:KEH21802};
RG EnsemblPlants;
RL Submitted (APR-2015) to UniProtKB.
RN [4] {ECO:0000313|Proteomes:UP000265566}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Jemalong A17 {ECO:0000313|Proteomes:UP000265566};
RX PubMed=30397259; DOI=10.1038/s41477-018-0286-7;
RA Pecrix Y., Staton S.E., Sallet E., Lelandais-Briere C., Moreau S.,
RA Carrere S., Blein T., Jardinaud M.F., Latrasse D., Zouine M., Zahm M.,
RA Kreplak J., Mayjonade B., Satge C., Perez M., Cauet S., Marande W.,
RA Chantry-Darmon C., Lopez-Roques C., Bouchez O., Berard A., Debelle F.,
RA Munos S., Bendahmane A., Berges H., Niebel A., Buitink J., Frugier F.,
RA Benhamed M., Crespi M., Gouzy J., Gamas P.;
RT "Whole-genome landscape of Medicago truncatula symbiotic genes.";
RL Nat. Plants 4:1017-1025(2018).
RN [5] {ECO:0000313|EMBL:RHN44561.1}
RP NUCLEOTIDE SEQUENCE.
RC TISSUE=Leaves {ECO:0000313|EMBL:RHN44561.1};
RA Pecrix Y., Gamas P., Carrere S.;
RT "Whole-genome landscape of Medicago truncatula symbiotic genes.";
RL Nat. Plants 0:0-0(2018).
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DR EMBL; CM001223; KEH21802.1; -; Genomic_DNA.
DR EMBL; PSQE01000007; RHN44561.1; -; Genomic_DNA.
DR RefSeq; XP_013447717.1; XM_013592263.1.
DR AlphaFoldDB; A0A072TWI4; -.
DR STRING; 3880.A0A072TWI4; -.
DR EnsemblPlants; KEH21802; KEH21802; MTR_7g018240.
DR GeneID; 25497640; -.
DR Gramene; KEH21802; KEH21802; MTR_7g018240.
DR KEGG; mtr:25497640; -.
DR HOGENOM; CLU_022294_0_0_1; -.
DR OrthoDB; 1210382at2759; -.
DR Proteomes; UP000002051; Chromosome 7.
DR Proteomes; UP000265566; Chromosome 7.
DR ExpressionAtlas; A0A072TWI4; differential.
DR GO; GO:0008380; P:RNA splicing; IEA:InterPro.
DR Gene3D; 1.25.40.10; Tetratricopeptide repeat domain; 3.
DR InterPro; IPR044578; BIR6-like.
DR InterPro; IPR002885; Pentatricopeptide_rpt.
DR InterPro; IPR011990; TPR-like_helical_dom_sf.
DR PANTHER; PTHR47003; OS01G0970900 PROTEIN; 1.
DR PANTHER; PTHR47003:SF3; PPR_LONG DOMAIN-CONTAINING PROTEIN; 1.
DR Pfam; PF01535; PPR; 3.
DR PROSITE; PS51375; PPR; 2.
PE 4: Predicted;
KW Reference proteome {ECO:0000313|Proteomes:UP000002051};
KW Repeat {ECO:0000256|ARBA:ARBA00022737}.
FT REPEAT 468..503
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT REPEAT 504..538
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
SQ SEQUENCE 628 AA; 71179 MW; FA624FC96DDBFD5B CRC64;
MRNQWRILHL LLRTHHKIPI QSHTLRSFSS TPLRFNTNYS KFLINPNFRH FSSEPVIPQP
NPDHIVIVDL FSKSIDLNEV NKHLDLINHD AVNAVLRKFD SDLDSARRLF KWVSENCPEK
LSSKSYNQML GVLGINGAVD EFWDLVVVMR KKGFGVAKWV KDRMLEYFEK GGMNGDAVKL
KELFDKDTVE RKFTSLCRIV RKNVWSDEVE KEIRDLNVGF SSESVNFVLE SLSSEPNKAL
IFFRWVEESG LFKHDGGSYN AVARVLGRED SIDRFWKVVG DMRSGGFEME EETFVKVLGR
FCKRGMIKEG VELYEFAMDG VDKPSVSCFT FLLRKVVSVK ELDMNLFSRV LKVFTGNGSA
LTDSMADAVL KSLTSVGRIG EWNKVLKEME DCGFIASGCL RRKIAFRLGA TGNKEQANEF
VDRIEAYGSS TDRKMRESLV EGHCVGGNLD KAFDSFKEMV EKEGVASAGY TFDVLMNSYC
QMNRAKDAYK ILCKWVSEKE LKPRHSTYKL MVNKLLAQGG FTDALNLLGL MRTQGFPPFT
EPFIEHISKS GSGDDAVLLL KAMTSKKFPS TSVYHVMFSA FFKQGRHVEA QNFLSKCPSF
IRDDAEVLDL FYSMNSKEAA ASSGKVAA
//
