ID A0A072U5A2_MEDTR Unreviewed; 1325 AA.
AC A0A072U5A2;
DT 01-OCT-2014, integrated into UniProtKB/TrEMBL.
DT 01-OCT-2014, sequence version 1.
DT 27-MAR-2024, entry version 40.
DE SubName: Full=Methyl-CpG-binding domain protein {ECO:0000313|EMBL:KEH21030.1};
DE SubName: Full=Putative DNA-binding domain-containing protein {ECO:0000313|EMBL:RHN43306.1};
GN Name=25502024 {ECO:0000313|EnsemblPlants:KEH21030};
GN OrderedLocusNames=MTR_8g096930 {ECO:0000313|EMBL:KEH21030.1};
GN ORFNames=MtrunA17_Chr8g0386371 {ECO:0000313|EMBL:RHN43306.1};
OS Medicago truncatula (Barrel medic) (Medicago tribuloides).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade;
OC NPAAA clade; Hologalegina; IRL clade; Trifolieae; Medicago.
OX NCBI_TaxID=3880 {ECO:0000313|EMBL:KEH21030.1, ECO:0000313|Proteomes:UP000002051};
RN [1] {ECO:0000313|EMBL:KEH21030.1, ECO:0000313|Proteomes:UP000002051}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=A17 {ECO:0000313|EMBL:KEH21030.1}, and cv. Jemalong A17
RC {ECO:0000313|EnsemblPlants:KEH21030,
RC ECO:0000313|Proteomes:UP000002051};
RX PubMed=22089132; DOI=10.1038/nature10625;
RA Young N.D., Debelle F., Oldroyd G.E., Geurts R., Cannon S.B., Udvardi M.K.,
RA Benedito V.A., Mayer K.F., Gouzy J., Schoof H., Van de Peer Y., Proost S.,
RA Cook D.R., Meyers B.C., Spannagl M., Cheung F., De Mita S.,
RA Krishnakumar V., Gundlach H., Zhou S., Mudge J., Bharti A.K., Murray J.D.,
RA Naoumkina M.A., Rosen B., Silverstein K.A., Tang H., Rombauts S.,
RA Zhao P.X., Zhou P., Barbe V., Bardou P., Bechner M., Bellec A., Berger A.,
RA Berges H., Bidwell S., Bisseling T., Choisne N., Couloux A., Denny R.,
RA Deshpande S., Dai X., Doyle J.J., Dudez A.M., Farmer A.D., Fouteau S.,
RA Franken C., Gibelin C., Gish J., Goldstein S., Gonzalez A.J., Green P.J.,
RA Hallab A., Hartog M., Hua A., Humphray S.J., Jeong D.H., Jing Y.,
RA Jocker A., Kenton S.M., Kim D.J., Klee K., Lai H., Lang C., Lin S.,
RA Macmil S.L., Magdelenat G., Matthews L., McCorrison J., Monaghan E.L.,
RA Mun J.H., Najar F.Z., Nicholson C., Noirot C., O'Bleness M., Paule C.R.,
RA Poulain J., Prion F., Qin B., Qu C., Retzel E.F., Riddle C., Sallet E.,
RA Samain S., Samson N., Sanders I., Saurat O., Scarpelli C., Schiex T.,
RA Segurens B., Severin A.J., Sherrier D.J., Shi R., Sims S., Singer S.R.,
RA Sinharoy S., Sterck L., Viollet A., Wang B.B., Wang K., Wang M., Wang X.,
RA Warfsmann J., Weissenbach J., White D.D., White J.D., Wiley G.B.,
RA Wincker P., Xing Y., Yang L., Yao Z., Ying F., Zhai J., Zhou L., Zuber A.,
RA Denarie J., Dixon R.A., May G.D., Schwartz D.C., Rogers J., Quetier F.,
RA Town C.D., Roe B.A.;
RT "The Medicago genome provides insight into the evolution of rhizobial
RT symbioses.";
RL Nature 480:520-524(2011).
RN [2] {ECO:0000313|EMBL:KEH21030.1, ECO:0000313|Proteomes:UP000002051}
RP GENOME REANNOTATION.
RC STRAIN=A17 {ECO:0000313|EMBL:KEH21030.1}, and cv. Jemalong A17
RC {ECO:0000313|EnsemblPlants:KEH21030,
RC ECO:0000313|Proteomes:UP000002051};
RX PubMed=24767513; DOI=10.1186/1471-2164-15-312;
RA Tang H., Krishnakumar V., Bidwell S., Rosen B., Chan A., Zhou S.,
RA Gentzbittel L., Childs K.L., Yandell M., Gundlach H., Mayer K.F.,
RA Schwartz D.C., Town C.D.;
RT "An improved genome release (version Mt4.0) for the model legume Medicago
RT truncatula.";
RL BMC Genomics 15:312-312(2014).
RN [3] {ECO:0000313|EnsemblPlants:KEH21030}
RP IDENTIFICATION.
RC STRAIN=cv. Jemalong A17 {ECO:0000313|EnsemblPlants:KEH21030};
RG EnsemblPlants;
RL Submitted (APR-2015) to UniProtKB.
RN [4] {ECO:0000313|EMBL:RHN43306.1}
RP NUCLEOTIDE SEQUENCE.
RC TISSUE=Leaves {ECO:0000313|EMBL:RHN43306.1};
RA Pecrix Y., Gamas P., Carrere S.;
RT "Whole-genome landscape of Medicago truncatula symbiotic genes.";
RL Nat. Plants 0:0-0(2018).
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|ARBA:ARBA00004123}.
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DR EMBL; CM001224; KEH21030.1; -; Genomic_DNA.
DR EMBL; PSQE01000008; RHN43306.1; -; Genomic_DNA.
DR RefSeq; XP_013447003.1; XM_013591549.1.
DR EnsemblPlants; KEH21030; KEH21030; MTR_8g096930.
DR GeneID; 25502024; -.
DR Gramene; KEH21030; KEH21030; MTR_8g096930.
DR KEGG; mtr:25502024; -.
DR HOGENOM; CLU_280252_0_0_1; -.
DR OrthoDB; 509339at2759; -.
DR Proteomes; UP000002051; Chromosome 8.
DR Proteomes; UP000265566; Chromosome 8.
DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR CDD; cd00122; MBD; 1.
DR InterPro; IPR016177; DNA-bd_dom_sf.
DR InterPro; IPR038945; MBD13-like.
DR InterPro; IPR001739; Methyl_CpG_DNA-bd.
DR PANTHER; PTHR34067; OS04G0193200 PROTEIN; 1.
DR PANTHER; PTHR34067:SF20; OS08G0206700 PROTEIN; 1.
DR Pfam; PF01429; MBD; 1.
DR SUPFAM; SSF54171; DNA-binding domain; 2.
DR PROSITE; PS50982; MBD; 2.
PE 4: Predicted;
KW DNA-binding {ECO:0000256|ARBA:ARBA00023125, ECO:0000313|EMBL:RHN43306.1};
KW Nucleus {ECO:0000256|ARBA:ARBA00023242};
KW Reference proteome {ECO:0000313|Proteomes:UP000002051};
KW Transcription {ECO:0000256|ARBA:ARBA00023163};
KW Transcription regulation {ECO:0000256|ARBA:ARBA00023015}.
FT DOMAIN 29..102
FT /note="MBD"
FT /evidence="ECO:0000259|PROSITE:PS50982"
FT DOMAIN 175..254
FT /note="MBD"
FT /evidence="ECO:0000259|PROSITE:PS50982"
FT REGION 1..42
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 84..180
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 238..268
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 397..471
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 501..547
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 600..620
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 633..701
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 739..760
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 837..891
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 1281..1303
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 10..41
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 99..164
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 246..261
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 428..470
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 512..547
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 604..620
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 633..657
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 849..891
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 1325 AA; 148350 MW; 28AE12A2AF025BE1 CRC64;
MGKPKVKKSG GTNKRIDNVT KRNSKQQTPE KADEHPEWLP NGWDIEVRTR QSGPAMGSAY
KCYIDPSNTY KFYSKPEVLR HLETIRDRKC SSNKKKGTSK HSPSKEEGEH TKSKQHSPSK
EEEKKTKSNQ HSPSKEEEKC INMHSPNKGE EKHISMHSPS KDGEKCTNMH SPSNVAGENS
IVEDLPPGWI KEVKIRKHRS GIKKDWFYID PVSGYVFHSK KDVQRFLKSG DIAKCAIKPS
RRQYQDEDNS TPSPAAKRQK RKQSTPMQKI FVAKEPVESL ELPDANNSRK GQDVNMSSGT
MVALDTSGES LKMDHCNHNI SKNDVNVSHR FSRRLAGVEP VKLVDNDVVN VSHRFSRRLA
GVEPVKLVDN VTNDQALLVP KRNLRKNRTT LGADMENKSS QHFNGVPKIE QPEAMDTSNT
LSEVVFKDQP RQLERDKIED NKPEFHTNSN KSSKKKEPSI PCRASKRLAG SEHRLMNSIS
CEIASKCKST RSKEVIAELQ QSEGGPVTKL TDHAPLHRES GNKRRKSPRV IPAADKQVEK
PEVDDEKSEP QLSFAFHYSW SDPSLDYAIN TLTGVLPPVD NSVDNGPSTV PETDILKPAF
DNVTGRSRGS QNNSVYNGPT TVHETDIEKT LFDNVSRGSN DSQNNLLDNV TKSRDKNPPV
QSKSKRKKEV KVPMRLSKRL AGIEPEASPS DKALEYSSRK PCKEEPTATV LLTNGGSNHL
YVGEETKLTR HVSDSLKTEV LGESSRKSGK SYDTQTVHKE QQLERAEAKN ISNDRSKSEL
TLPFGESWSD PCLEFAFKTL TGALPVDSSA EIFKVSTPSV GELPNNKLYG RVTTSMDKKV
HDKTNQSQNN KERNMNDQSS KILLGQPELR TSSLSGKNMP KFTNGESHSH KGNIIRNQEP
VLRTSSSSGK SVSELTTRES HNHEENMMRN LFGEPLYVED ENTTQLPHHS RTNAYSQIHE
EPFKKNDQVA EGEFGTLEKP PGFETKMFKH GNGESHSHEG NNIRNLEPVL RTSSTSGKNV
STTRESHNHE ENMMMNLFGE PLYVEDENTT QLLHHSRTNA YSQIHAEPLK KNDQVAEGEF
GTLEKPPGFE TKTFNHGNGE SHSHEGNTIR NLEPVLRTSS PSGKNVSKLA TGEFHSHEDN
LMMSLFGEPL YVEDENTTQL LHHSRTNAYS QIHEEPVKKN DQVAEGEFGT SEQPPPFQTV
MLNHDNTELQ FCESFMNSWS DPCLEFAFKT LTGVIPVEEN LAVQGGVQEP VNCHDGRDGV
SALPDFGSSS FSQSDFSFHF DTGGKSMPGQ QSSMSSPFPS LSLQGCPGVD PQRQYSQFNN
NFQRR
//
