ID A0A072UQ90_MEDTR Unreviewed; 626 AA.
AC A0A072UQ90;
DT 01-OCT-2014, integrated into UniProtKB/TrEMBL.
DT 01-OCT-2014, sequence version 1.
DT 27-MAR-2024, entry version 46.
DE SubName: Full=Pentatricopeptide (PPR) repeat protein {ECO:0000313|EMBL:KEH31516.1};
DE SubName: Full=Putative tetratricopeptide-like helical domain, DYW domain-containing protein {ECO:0000313|EMBL:RHN63010.1};
GN Name=25493520 {ECO:0000313|EnsemblPlants:KEH31516};
GN OrderedLocusNames=MTR_4g095065 {ECO:0000313|EMBL:KEH31516.1};
GN ORFNames=MtrunA17_Chr4g0053681 {ECO:0000313|EMBL:RHN63010.1};
OS Medicago truncatula (Barrel medic) (Medicago tribuloides).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade;
OC NPAAA clade; Hologalegina; IRL clade; Trifolieae; Medicago.
OX NCBI_TaxID=3880 {ECO:0000313|EMBL:KEH31516.1, ECO:0000313|Proteomes:UP000002051};
RN [1] {ECO:0000313|EMBL:KEH31516.1, ECO:0000313|Proteomes:UP000002051}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=A17 {ECO:0000313|EMBL:KEH31516.1}, and cv. Jemalong A17
RC {ECO:0000313|EnsemblPlants:KEH31516,
RC ECO:0000313|Proteomes:UP000002051};
RX PubMed=22089132; DOI=10.1038/nature10625;
RA Young N.D., Debelle F., Oldroyd G.E., Geurts R., Cannon S.B., Udvardi M.K.,
RA Benedito V.A., Mayer K.F., Gouzy J., Schoof H., Van de Peer Y., Proost S.,
RA Cook D.R., Meyers B.C., Spannagl M., Cheung F., De Mita S.,
RA Krishnakumar V., Gundlach H., Zhou S., Mudge J., Bharti A.K., Murray J.D.,
RA Naoumkina M.A., Rosen B., Silverstein K.A., Tang H., Rombauts S.,
RA Zhao P.X., Zhou P., Barbe V., Bardou P., Bechner M., Bellec A., Berger A.,
RA Berges H., Bidwell S., Bisseling T., Choisne N., Couloux A., Denny R.,
RA Deshpande S., Dai X., Doyle J.J., Dudez A.M., Farmer A.D., Fouteau S.,
RA Franken C., Gibelin C., Gish J., Goldstein S., Gonzalez A.J., Green P.J.,
RA Hallab A., Hartog M., Hua A., Humphray S.J., Jeong D.H., Jing Y.,
RA Jocker A., Kenton S.M., Kim D.J., Klee K., Lai H., Lang C., Lin S.,
RA Macmil S.L., Magdelenat G., Matthews L., McCorrison J., Monaghan E.L.,
RA Mun J.H., Najar F.Z., Nicholson C., Noirot C., O'Bleness M., Paule C.R.,
RA Poulain J., Prion F., Qin B., Qu C., Retzel E.F., Riddle C., Sallet E.,
RA Samain S., Samson N., Sanders I., Saurat O., Scarpelli C., Schiex T.,
RA Segurens B., Severin A.J., Sherrier D.J., Shi R., Sims S., Singer S.R.,
RA Sinharoy S., Sterck L., Viollet A., Wang B.B., Wang K., Wang M., Wang X.,
RA Warfsmann J., Weissenbach J., White D.D., White J.D., Wiley G.B.,
RA Wincker P., Xing Y., Yang L., Yao Z., Ying F., Zhai J., Zhou L., Zuber A.,
RA Denarie J., Dixon R.A., May G.D., Schwartz D.C., Rogers J., Quetier F.,
RA Town C.D., Roe B.A.;
RT "The Medicago genome provides insight into the evolution of rhizobial
RT symbioses.";
RL Nature 480:520-524(2011).
RN [2] {ECO:0000313|EMBL:KEH31516.1, ECO:0000313|Proteomes:UP000002051}
RP GENOME REANNOTATION.
RC STRAIN=A17 {ECO:0000313|EMBL:KEH31516.1}, and cv. Jemalong A17
RC {ECO:0000313|EnsemblPlants:KEH31516,
RC ECO:0000313|Proteomes:UP000002051};
RX PubMed=24767513; DOI=10.1186/1471-2164-15-312;
RA Tang H., Krishnakumar V., Bidwell S., Rosen B., Chan A., Zhou S.,
RA Gentzbittel L., Childs K.L., Yandell M., Gundlach H., Mayer K.F.,
RA Schwartz D.C., Town C.D.;
RT "An improved genome release (version Mt4.0) for the model legume Medicago
RT truncatula.";
RL BMC Genomics 15:312-312(2014).
RN [3] {ECO:0000313|EnsemblPlants:KEH31516}
RP IDENTIFICATION.
RC STRAIN=cv. Jemalong A17 {ECO:0000313|EnsemblPlants:KEH31516};
RG EnsemblPlants;
RL Submitted (APR-2015) to UniProtKB.
RN [4] {ECO:0000313|EMBL:RHN63010.1}
RP NUCLEOTIDE SEQUENCE.
RC TISSUE=Leaves {ECO:0000313|EMBL:RHN63010.1};
RA Pecrix Y., Gamas P., Carrere S.;
RT "Whole-genome landscape of Medicago truncatula symbiotic genes.";
RL Nat. Plants 0:0-0(2018).
CC -!- SIMILARITY: Belongs to the PPR family. PCMP-H subfamily.
CC {ECO:0000256|ARBA:ARBA00006643}.
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DR EMBL; CM001220; KEH31516.1; -; Genomic_DNA.
DR EMBL; PSQE01000004; RHN63010.1; -; Genomic_DNA.
DR RefSeq; XP_013457485.1; XM_013602031.1.
DR AlphaFoldDB; A0A072UQ90; -.
DR EnsemblPlants; KEH31516; KEH31516; MTR_4g095065.
DR GeneID; 25493520; -.
DR Gramene; KEH31516; KEH31516; MTR_4g095065.
DR KEGG; mtr:25493520; -.
DR HOGENOM; CLU_002706_37_2_1; -.
DR OrthoDB; 447814at2759; -.
DR Proteomes; UP000002051; Chromosome 4.
DR Proteomes; UP000265566; Chromosome 4.
DR GO; GO:0009507; C:chloroplast; IBA:GO_Central.
DR GO; GO:0003723; F:RNA binding; IEA:InterPro.
DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro.
DR GO; GO:1900865; P:chloroplast RNA modification; IBA:GO_Central.
DR Gene3D; 1.25.40.10; Tetratricopeptide repeat domain; 4.
DR InterPro; IPR032867; DYW_dom.
DR InterPro; IPR046848; E_motif.
DR InterPro; IPR002885; Pentatricopeptide_rpt.
DR InterPro; IPR045215; PPR_prot_At1g15510.
DR InterPro; IPR011990; TPR-like_helical_dom_sf.
DR NCBIfam; TIGR00756; PPR; 6.
DR PANTHER; PTHR24015:SF1832; OS03G0241800 PROTEIN; 1.
DR PANTHER; PTHR24015; OS07G0578800 PROTEIN-RELATED; 1.
DR Pfam; PF14432; DYW_deaminase; 1.
DR Pfam; PF20431; E_motif; 1.
DR Pfam; PF01535; PPR; 3.
DR Pfam; PF13041; PPR_2; 3.
DR PROSITE; PS51375; PPR; 5.
PE 3: Inferred from homology;
KW Reference proteome {ECO:0000313|Proteomes:UP000002051};
KW Repeat {ECO:0000256|ARBA:ARBA00022737}.
FT REPEAT 86..120
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT REPEAT 152..186
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT REPEAT 215..249
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT REPEAT 319..353
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT REPEAT 456..490
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT DOMAIN 534..626
FT /note="DYW"
FT /evidence="ECO:0000259|Pfam:PF14432"
SQ SEQUENCE 626 AA; 70077 MW; 0503D2701E739C55 CRC64;
MATTPLFITP PPPPSATAAP PFTVETLAVL IDKSKSKTHL LQIHASLVRR NLDDHTILNF
KLQRRYSSLG HLNYSVTLFN RTRNRDVYTW TSIIHAHTQS KLNDQALSYY AQMLTHRIQP
NAFTFSSLLN GSTIQPIKSI HCHVIKFGLC SDTYVATGLV DGYARGGDFI SAEKLFDKMP
EKSLISFTTM LMCYAKHGKL LEARLLFDGM EGNRDVVVWN VMIDGYAQNG FPNECLLLFR
RMLVEKVKPN VITLLPVLSS CGQVGALESG RWVHSYIKNG KDGVVGVEVR VGTALVDMYC
KCGSLEDARK VFDKIDGKDV VAWNSMIMGY AVNGLSEEAL KLFHEMHGEG VRPSYVTFIA
LLTACGHSGL VTKGWEMFNL MKNEYKMEPR VEHFGCMVNL LGRAGRLQEA YDLVRSMKID
PDPVIWGTLL WACRLHNNIS LGEEIAEFLL SNDLASSGTY VLLSNIYAAA GNWDGAAKVR
SLMKDSGVEK EPGCSIIEVN NRVHEFIAGD LKHPKSKDIY LMLEEMNSWL KGKGYTPKTD
VVLHDIGEEQ KELSLEVHSE KLALAFGLIS TRPGTTVKIV KNLRVCLDCH AVMKMISKIT
GRRIVMRDRN RFHHFDNGSC SCGDFW
//
