ID A0A072V8U6_MEDTR Unreviewed; 1003 AA.
AC A0A072V8U6;
DT 01-OCT-2014, integrated into UniProtKB/TrEMBL.
DT 01-OCT-2014, sequence version 1.
DT 27-MAR-2024, entry version 42.
DE SubName: Full=Putative chromatin remodeling & transcription regulator FYR family {ECO:0000313|EMBL:RHN73857.1};
DE SubName: Full=Transcription factor jumonji family protein {ECO:0000313|EMBL:KEH37778.1};
GN Name=25486667 {ECO:0000313|EnsemblPlants:KEH37778};
GN OrderedLocusNames=MTR_2g047130 {ECO:0000313|EMBL:KEH37778.1};
GN ORFNames=MtrunA17_Chr2g0303101 {ECO:0000313|EMBL:RHN73857.1};
OS Medicago truncatula (Barrel medic) (Medicago tribuloides).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade;
OC NPAAA clade; Hologalegina; IRL clade; Trifolieae; Medicago.
OX NCBI_TaxID=3880 {ECO:0000313|EMBL:KEH37778.1, ECO:0000313|Proteomes:UP000002051};
RN [1] {ECO:0000313|EMBL:KEH37778.1, ECO:0000313|Proteomes:UP000002051}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=A17 {ECO:0000313|EMBL:KEH37778.1}, and cv. Jemalong A17
RC {ECO:0000313|EnsemblPlants:KEH37778,
RC ECO:0000313|Proteomes:UP000002051};
RX PubMed=22089132; DOI=10.1038/nature10625;
RA Young N.D., Debelle F., Oldroyd G.E., Geurts R., Cannon S.B., Udvardi M.K.,
RA Benedito V.A., Mayer K.F., Gouzy J., Schoof H., Van de Peer Y., Proost S.,
RA Cook D.R., Meyers B.C., Spannagl M., Cheung F., De Mita S.,
RA Krishnakumar V., Gundlach H., Zhou S., Mudge J., Bharti A.K., Murray J.D.,
RA Naoumkina M.A., Rosen B., Silverstein K.A., Tang H., Rombauts S.,
RA Zhao P.X., Zhou P., Barbe V., Bardou P., Bechner M., Bellec A., Berger A.,
RA Berges H., Bidwell S., Bisseling T., Choisne N., Couloux A., Denny R.,
RA Deshpande S., Dai X., Doyle J.J., Dudez A.M., Farmer A.D., Fouteau S.,
RA Franken C., Gibelin C., Gish J., Goldstein S., Gonzalez A.J., Green P.J.,
RA Hallab A., Hartog M., Hua A., Humphray S.J., Jeong D.H., Jing Y.,
RA Jocker A., Kenton S.M., Kim D.J., Klee K., Lai H., Lang C., Lin S.,
RA Macmil S.L., Magdelenat G., Matthews L., McCorrison J., Monaghan E.L.,
RA Mun J.H., Najar F.Z., Nicholson C., Noirot C., O'Bleness M., Paule C.R.,
RA Poulain J., Prion F., Qin B., Qu C., Retzel E.F., Riddle C., Sallet E.,
RA Samain S., Samson N., Sanders I., Saurat O., Scarpelli C., Schiex T.,
RA Segurens B., Severin A.J., Sherrier D.J., Shi R., Sims S., Singer S.R.,
RA Sinharoy S., Sterck L., Viollet A., Wang B.B., Wang K., Wang M., Wang X.,
RA Warfsmann J., Weissenbach J., White D.D., White J.D., Wiley G.B.,
RA Wincker P., Xing Y., Yang L., Yao Z., Ying F., Zhai J., Zhou L., Zuber A.,
RA Denarie J., Dixon R.A., May G.D., Schwartz D.C., Rogers J., Quetier F.,
RA Town C.D., Roe B.A.;
RT "The Medicago genome provides insight into the evolution of rhizobial
RT symbioses.";
RL Nature 480:520-524(2011).
RN [2] {ECO:0000313|EMBL:KEH37778.1, ECO:0000313|Proteomes:UP000002051}
RP GENOME REANNOTATION.
RC STRAIN=A17 {ECO:0000313|EMBL:KEH37778.1}, and cv. Jemalong A17
RC {ECO:0000313|EnsemblPlants:KEH37778,
RC ECO:0000313|Proteomes:UP000002051};
RX PubMed=24767513; DOI=10.1186/1471-2164-15-312;
RA Tang H., Krishnakumar V., Bidwell S., Rosen B., Chan A., Zhou S.,
RA Gentzbittel L., Childs K.L., Yandell M., Gundlach H., Mayer K.F.,
RA Schwartz D.C., Town C.D.;
RT "An improved genome release (version Mt4.0) for the model legume Medicago
RT truncatula.";
RL BMC Genomics 15:312-312(2014).
RN [3] {ECO:0000313|EnsemblPlants:KEH37778}
RP IDENTIFICATION.
RC STRAIN=cv. Jemalong A17 {ECO:0000313|EnsemblPlants:KEH37778};
RG EnsemblPlants;
RL Submitted (APR-2015) to UniProtKB.
RN [4] {ECO:0000313|Proteomes:UP000265566}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Jemalong A17 {ECO:0000313|Proteomes:UP000265566};
RX PubMed=30397259; DOI=10.1038/s41477-018-0286-7;
RA Pecrix Y., Staton S.E., Sallet E., Lelandais-Briere C., Moreau S.,
RA Carrere S., Blein T., Jardinaud M.F., Latrasse D., Zouine M., Zahm M.,
RA Kreplak J., Mayjonade B., Satge C., Perez M., Cauet S., Marande W.,
RA Chantry-Darmon C., Lopez-Roques C., Bouchez O., Berard A., Debelle F.,
RA Munos S., Bendahmane A., Berges H., Niebel A., Buitink J., Frugier F.,
RA Benhamed M., Crespi M., Gouzy J., Gamas P.;
RT "Whole-genome landscape of Medicago truncatula symbiotic genes.";
RL Nat. Plants 4:1017-1025(2018).
RN [5] {ECO:0000313|EMBL:RHN73857.1}
RP NUCLEOTIDE SEQUENCE.
RC TISSUE=Leaves {ECO:0000313|EMBL:RHN73857.1};
RA Pecrix Y., Gamas P., Carrere S.;
RT "Whole-genome landscape of Medicago truncatula symbiotic genes.";
RL Nat. Plants 0:0-0(2018).
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|ARBA:ARBA00004123}.
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DR EMBL; CM001218; KEH37778.1; -; Genomic_DNA.
DR EMBL; PSQE01000002; RHN73857.1; -; Genomic_DNA.
DR RefSeq; XP_013463743.1; XM_013608289.1.
DR AlphaFoldDB; A0A072V8U6; -.
DR STRING; 3880.A0A072V8U6; -.
DR EnsemblPlants; KEH37778; KEH37778; MTR_2g047130.
DR GeneID; 25486667; -.
DR Gramene; KEH37778; KEH37778; MTR_2g047130.
DR KEGG; mtr:25486667; -.
DR eggNOG; KOG1246; Eukaryota.
DR HOGENOM; CLU_000991_8_0_1; -.
DR OrthoDB; 1205686at2759; -.
DR Proteomes; UP000002051; Chromosome 2.
DR Proteomes; UP000265566; Chromosome 2.
DR ExpressionAtlas; A0A072V8U6; differential.
DR GO; GO:0000785; C:chromatin; IBA:GO_Central.
DR GO; GO:0005634; C:nucleus; IBA:GO_Central.
DR GO; GO:0034647; F:histone H3K4me/H3K4me2/H3K4me3 demethylase activity; IBA:GO_Central.
DR GO; GO:0006338; P:chromatin remodeling; IBA:GO_Central.
DR GO; GO:0006355; P:regulation of DNA-templated transcription; IEA:UniProt.
DR GO; GO:0010468; P:regulation of gene expression; IBA:GO_Central.
DR GO; GO:0022414; P:reproductive process; IEA:UniProt.
DR GO; GO:0048731; P:system development; IEA:UniProt.
DR Gene3D; 3.30.160.360; -; 1.
DR Gene3D; 2.60.120.650; Cupin; 1.
DR InterPro; IPR003889; FYrich_C.
DR InterPro; IPR003888; FYrich_N.
DR InterPro; IPR003347; JmjC_dom.
DR InterPro; IPR003349; JmjN.
DR InterPro; IPR004198; Znf_C5HC2.
DR PANTHER; PTHR10694; LYSINE-SPECIFIC DEMETHYLASE; 1.
DR PANTHER; PTHR10694:SF105; LYSINE-SPECIFIC DEMETHYLASE JMJ14; 1.
DR Pfam; PF05965; FYRC; 1.
DR Pfam; PF05964; FYRN; 1.
DR Pfam; PF02373; JmjC; 1.
DR Pfam; PF02375; JmjN; 1.
DR Pfam; PF02928; zf-C5HC2; 1.
DR SMART; SM00542; FYRC; 1.
DR SMART; SM00541; FYRN; 1.
DR SMART; SM00558; JmjC; 1.
DR SMART; SM00545; JmjN; 1.
DR SUPFAM; SSF51197; Clavaminate synthase-like; 1.
DR PROSITE; PS51543; FYRC; 1.
DR PROSITE; PS51542; FYRN; 1.
DR PROSITE; PS51184; JMJC; 1.
DR PROSITE; PS51183; JMJN; 1.
PE 4: Predicted;
KW Nucleus {ECO:0000256|ARBA:ARBA00023242};
KW Reference proteome {ECO:0000313|Proteomes:UP000002051};
KW Transcription {ECO:0000256|ARBA:ARBA00023163};
KW Transcription regulation {ECO:0000256|ARBA:ARBA00023015}.
FT DOMAIN 52..93
FT /note="JmjN"
FT /evidence="ECO:0000259|PROSITE:PS51183"
FT DOMAIN 260..426
FT /note="JmjC"
FT /evidence="ECO:0000259|PROSITE:PS51184"
FT REGION 1..34
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 117..158
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 197..216
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 608..629
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 713..737
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 124..142
FT /note="Basic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 713..729
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 1003 AA; 112489 MW; 2B4E5609F4D5246C CRC64;
MKQMELDAIE DSPLRHKPKK DNALESPESL RSKKISARWD PSEACRPIID EAPVFHPTIE
EFEDTLSYIA KIRPLAEPYG ICRIVPPACW VPPCLLKEKD IWENAEFSTR IQQIDLLQNR
EPMKKKSRGR KRKRRRNSKS GTCRRASKSA SEANNASEAD EKYGFQAGSD FTFKDFQQYA
SHFKECYFGL KDANEDGKVN DSNHQNRREP SEEEIEGEYW RIVEQPTDEV EVYYGADLET
GVFGSGFSKA SSIPKGYPDQ YAISGWNLNN FPRLPGSVLS FEGSDISGVL VPWLYVGMCF
SSFCWHVEDH HLYSLNYLHF GDSKIWYGVP GSHASALENA MKKHLPDLFE EVPNLLNDLV
TQLSPSILKD EGVPVYRTVQ NSGEFVITFP RGYHSGFNCG FNCAEAVNVA PVDWLTHGLN
AVELYSLQRR KTSLSHDKLL FGSSLEAIRA LAELTLHGKE SSKNLKWRSY CGKDGVLTMA
FKARIKMEEE RLNCLPTHFK SLKMGNDFDL HTERECFSCF YDLYLSAVGC ECSPDKYSCL
THASSFCMCE MDQRFVLLRY NMNELNKLLE ALEGDSLALK LWESKNFGMV SAEANEVCMN
KPEVDGDNGH EETGCAGTRD RSNSHATSEP MQCESHLVTL SAPNESIDSD NDNMIVVDKD
KVDIADSHNK GDSVEEKACC SKIKKEQDNM EIVVDLSPSS SVVKTEVSSC SRNVHNPCTS
DSGKYEGQQQ MDSDSRKKPK IVVEKVIDTT SASISLTQES FLMQILSTSV KPISLGSVVH
GKLWCNKHAI YPKGFKSRVN FFSIIDPTRI CSYVSEVINA GLLGPLFKVT MEECPSVTFT
ETSADKCWES VLKRLHDKIT EQRSLGELEL PSLELLKSIN GFRMFGFPLP SIVQAIEAQD
PGHQCAEYWN HKGFPTSPGS VIDNCKVLCC SSSPTKVFGI NLTDQAKDNI GGSSSSLEEM
KSILQKASPE ELSSLRKFLI SDAQCSEWRI TLTSLIDEIQ KAL
//
