ID A0A072VFI7_MEDTR Unreviewed; 683 AA.
AC A0A072VFI7;
DT 01-OCT-2014, integrated into UniProtKB/TrEMBL.
DT 01-OCT-2014, sequence version 1.
DT 24-JAN-2024, entry version 36.
DE SubName: Full=Exosome complex exonuclease RRP41 {ECO:0000313|EMBL:KEH40572.1};
GN OrderedLocusNames=MTR_1g031820 {ECO:0000313|EMBL:KEH40572.1};
OS Medicago truncatula (Barrel medic) (Medicago tribuloides).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade;
OC NPAAA clade; Hologalegina; IRL clade; Trifolieae; Medicago.
OX NCBI_TaxID=3880 {ECO:0000313|EMBL:KEH40572.1, ECO:0000313|Proteomes:UP000002051};
RN [1] {ECO:0000313|EMBL:KEH40572.1, ECO:0000313|Proteomes:UP000002051}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=A17 {ECO:0000313|EMBL:KEH40572.1}, and cv. Jemalong A17
RC {ECO:0000313|EnsemblPlants:KEH40572,
RC ECO:0000313|Proteomes:UP000002051};
RX PubMed=22089132; DOI=10.1038/nature10625;
RA Young N.D., Debelle F., Oldroyd G.E., Geurts R., Cannon S.B., Udvardi M.K.,
RA Benedito V.A., Mayer K.F., Gouzy J., Schoof H., Van de Peer Y., Proost S.,
RA Cook D.R., Meyers B.C., Spannagl M., Cheung F., De Mita S.,
RA Krishnakumar V., Gundlach H., Zhou S., Mudge J., Bharti A.K., Murray J.D.,
RA Naoumkina M.A., Rosen B., Silverstein K.A., Tang H., Rombauts S.,
RA Zhao P.X., Zhou P., Barbe V., Bardou P., Bechner M., Bellec A., Berger A.,
RA Berges H., Bidwell S., Bisseling T., Choisne N., Couloux A., Denny R.,
RA Deshpande S., Dai X., Doyle J.J., Dudez A.M., Farmer A.D., Fouteau S.,
RA Franken C., Gibelin C., Gish J., Goldstein S., Gonzalez A.J., Green P.J.,
RA Hallab A., Hartog M., Hua A., Humphray S.J., Jeong D.H., Jing Y.,
RA Jocker A., Kenton S.M., Kim D.J., Klee K., Lai H., Lang C., Lin S.,
RA Macmil S.L., Magdelenat G., Matthews L., McCorrison J., Monaghan E.L.,
RA Mun J.H., Najar F.Z., Nicholson C., Noirot C., O'Bleness M., Paule C.R.,
RA Poulain J., Prion F., Qin B., Qu C., Retzel E.F., Riddle C., Sallet E.,
RA Samain S., Samson N., Sanders I., Saurat O., Scarpelli C., Schiex T.,
RA Segurens B., Severin A.J., Sherrier D.J., Shi R., Sims S., Singer S.R.,
RA Sinharoy S., Sterck L., Viollet A., Wang B.B., Wang K., Wang M., Wang X.,
RA Warfsmann J., Weissenbach J., White D.D., White J.D., Wiley G.B.,
RA Wincker P., Xing Y., Yang L., Yao Z., Ying F., Zhai J., Zhou L., Zuber A.,
RA Denarie J., Dixon R.A., May G.D., Schwartz D.C., Rogers J., Quetier F.,
RA Town C.D., Roe B.A.;
RT "The Medicago genome provides insight into the evolution of rhizobial
RT symbioses.";
RL Nature 480:520-524(2011).
RN [2] {ECO:0000313|EMBL:KEH40572.1, ECO:0000313|Proteomes:UP000002051}
RP GENOME REANNOTATION.
RC STRAIN=A17 {ECO:0000313|EMBL:KEH40572.1}, and cv. Jemalong A17
RC {ECO:0000313|EnsemblPlants:KEH40572,
RC ECO:0000313|Proteomes:UP000002051};
RX PubMed=24767513; DOI=10.1186/1471-2164-15-312;
RA Tang H., Krishnakumar V., Bidwell S., Rosen B., Chan A., Zhou S.,
RA Gentzbittel L., Childs K.L., Yandell M., Gundlach H., Mayer K.F.,
RA Schwartz D.C., Town C.D.;
RT "An improved genome release (version Mt4.0) for the model legume Medicago
RT truncatula.";
RL BMC Genomics 15:312-312(2014).
RN [3] {ECO:0000313|EnsemblPlants:KEH40572}
RP IDENTIFICATION.
RC STRAIN=cv. Jemalong A17 {ECO:0000313|EnsemblPlants:KEH40572};
RG EnsemblPlants;
RL Submitted (APR-2015) to UniProtKB.
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DR EMBL; CM001217; KEH40572.1; -; Genomic_DNA.
DR RefSeq; XP_013466531.1; XM_013611077.1.
DR AlphaFoldDB; A0A072VFI7; -.
DR STRING; 3880.A0A072VFI7; -.
DR EnsemblPlants; KEH40572; KEH40572; MTR_1g031820.
DR Gramene; KEH40572; KEH40572; MTR_1g031820.
DR HOGENOM; CLU_403020_0_0_1; -.
DR Proteomes; UP000002051; Chromosome 1.
DR GO; GO:0004527; F:exonuclease activity; IEA:UniProtKB-KW.
DR CDD; cd11367; RNase_PH_RRP42; 1.
DR Gene3D; 3.30.230.70; GHMP Kinase, N-terminal domain; 1.
DR InterPro; IPR001247; ExoRNase_PH_dom1.
DR InterPro; IPR015847; ExoRNase_PH_dom2.
DR InterPro; IPR036345; ExoRNase_PH_dom2_sf.
DR InterPro; IPR027408; PNPase/RNase_PH_dom_sf.
DR InterPro; IPR020568; Ribosomal_Su5_D2-typ_SF.
DR PANTHER; PTHR37763; EXOSOME COMPLEX EXONUCLEASE; 1.
DR PANTHER; PTHR37763:SF1; EXOSOME COMPLEX EXONUCLEASE; 1.
DR Pfam; PF01138; RNase_PH; 1.
DR Pfam; PF03725; RNase_PH_C; 1.
DR SUPFAM; SSF55666; Ribonuclease PH domain 2-like; 1.
DR SUPFAM; SSF54211; Ribosomal protein S5 domain 2-like; 1.
PE 4: Predicted;
KW Exonuclease {ECO:0000313|EMBL:KEH40572.1};
KW Hydrolase {ECO:0000313|EMBL:KEH40572.1};
KW Nuclease {ECO:0000313|EMBL:KEH40572.1};
KW Reference proteome {ECO:0000313|Proteomes:UP000002051}.
FT DOMAIN 427..566
FT /note="Exoribonuclease phosphorolytic"
FT /evidence="ECO:0000259|Pfam:PF01138"
FT DOMAIN 596..660
FT /note="Exoribonuclease phosphorolytic"
FT /evidence="ECO:0000259|Pfam:PF03725"
SQ SEQUENCE 683 AA; 75095 MW; D01997C4A9EE18AF CRC64;
MLYHSSQDVY DMQWYRSEFP KIIKLTQLLA NVDTINGRLV DASSNSTIFD DQIENEMRTF
KSLVRLFIGS PFVQDKMRRV LALNTNTQHD AFTPFSKTTE REPRVIDSLT KVSNFLDVSA
QQRKVVRFKV CPQVTQHHIW TGALKETLNN FAVDLDYLAS QGSNEGTTLG QQIIHSCLKF
LTETASFSDA DSSSWMKFAP SKIVNSSDSQ KWEDVLAMFN DLIKCCKSET RLKSHVAKVE
VMKEGLLHIK DITIDNSIAY KDARYLQILV QKKLSKTLGH SSGCLFTLLQ YYLYGRVTDI
EVDLCGGIYK NGNDSRFCLS MGRILTSDSE RMVGRGVKQL DRALGLFKFV WETAGMKGHL
DLRGHLWCVG ADNRVLRYRG NMYFLHGGLT GDTYVVGMVG LSLGEQHFIQ GGIAQDLRCD
GRKRLTYRPI HVETGVIPQA NGSARVKIGA TEVIASVKAE LGKPSSMQPD KGKVFIYIDC
SSTAEPAFEG RGGEELSAEL STALQRCLLG AKSGAGAGID RTSLVVVEGK ICWDLYIDGL
VVSSDGNLLD ALGSAIKAAL SNTGIPSVKV TADASSDEQP EVDVSDEEFL QFDTSGVPVI
ITLTKIGRHY IVDATPEEES QMSSAVSISI NRKGHICGIT KRGGAGLDPS VILDMVSVAK
HVSEQLMNKL DSEIASAEAE DES
//
