ID A0A072VPS6_MEDTR Unreviewed; 581 AA.
AC A0A072VPS6;
DT 01-OCT-2014, integrated into UniProtKB/TrEMBL.
DT 01-OCT-2014, sequence version 1.
DT 27-MAR-2024, entry version 41.
DE SubName: Full=Glycosyl hydrolase family 10 protein {ECO:0000313|EMBL:KEH44019.1};
GN Name=25485345 {ECO:0000313|EnsemblPlants:KEH44019};
GN OrderedLocusNames=MTR_1g106200 {ECO:0000313|EMBL:KEH44019.1};
OS Medicago truncatula (Barrel medic) (Medicago tribuloides).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade;
OC NPAAA clade; Hologalegina; IRL clade; Trifolieae; Medicago.
OX NCBI_TaxID=3880 {ECO:0000313|EMBL:KEH44019.1, ECO:0000313|Proteomes:UP000002051};
RN [1] {ECO:0000313|EMBL:KEH44019.1, ECO:0000313|Proteomes:UP000002051}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=A17 {ECO:0000313|EMBL:KEH44019.1}, and cv. Jemalong A17
RC {ECO:0000313|EnsemblPlants:KEH44019,
RC ECO:0000313|Proteomes:UP000002051};
RX PubMed=22089132; DOI=10.1038/nature10625;
RA Young N.D., Debelle F., Oldroyd G.E., Geurts R., Cannon S.B., Udvardi M.K.,
RA Benedito V.A., Mayer K.F., Gouzy J., Schoof H., Van de Peer Y., Proost S.,
RA Cook D.R., Meyers B.C., Spannagl M., Cheung F., De Mita S.,
RA Krishnakumar V., Gundlach H., Zhou S., Mudge J., Bharti A.K., Murray J.D.,
RA Naoumkina M.A., Rosen B., Silverstein K.A., Tang H., Rombauts S.,
RA Zhao P.X., Zhou P., Barbe V., Bardou P., Bechner M., Bellec A., Berger A.,
RA Berges H., Bidwell S., Bisseling T., Choisne N., Couloux A., Denny R.,
RA Deshpande S., Dai X., Doyle J.J., Dudez A.M., Farmer A.D., Fouteau S.,
RA Franken C., Gibelin C., Gish J., Goldstein S., Gonzalez A.J., Green P.J.,
RA Hallab A., Hartog M., Hua A., Humphray S.J., Jeong D.H., Jing Y.,
RA Jocker A., Kenton S.M., Kim D.J., Klee K., Lai H., Lang C., Lin S.,
RA Macmil S.L., Magdelenat G., Matthews L., McCorrison J., Monaghan E.L.,
RA Mun J.H., Najar F.Z., Nicholson C., Noirot C., O'Bleness M., Paule C.R.,
RA Poulain J., Prion F., Qin B., Qu C., Retzel E.F., Riddle C., Sallet E.,
RA Samain S., Samson N., Sanders I., Saurat O., Scarpelli C., Schiex T.,
RA Segurens B., Severin A.J., Sherrier D.J., Shi R., Sims S., Singer S.R.,
RA Sinharoy S., Sterck L., Viollet A., Wang B.B., Wang K., Wang M., Wang X.,
RA Warfsmann J., Weissenbach J., White D.D., White J.D., Wiley G.B.,
RA Wincker P., Xing Y., Yang L., Yao Z., Ying F., Zhai J., Zhou L., Zuber A.,
RA Denarie J., Dixon R.A., May G.D., Schwartz D.C., Rogers J., Quetier F.,
RA Town C.D., Roe B.A.;
RT "The Medicago genome provides insight into the evolution of rhizobial
RT symbioses.";
RL Nature 480:520-524(2011).
RN [2] {ECO:0000313|EMBL:KEH44019.1, ECO:0000313|Proteomes:UP000002051}
RP GENOME REANNOTATION.
RC STRAIN=A17 {ECO:0000313|EMBL:KEH44019.1}, and cv. Jemalong A17
RC {ECO:0000313|EnsemblPlants:KEH44019,
RC ECO:0000313|Proteomes:UP000002051};
RX PubMed=24767513; DOI=10.1186/1471-2164-15-312;
RA Tang H., Krishnakumar V., Bidwell S., Rosen B., Chan A., Zhou S.,
RA Gentzbittel L., Childs K.L., Yandell M., Gundlach H., Mayer K.F.,
RA Schwartz D.C., Town C.D.;
RT "An improved genome release (version Mt4.0) for the model legume Medicago
RT truncatula.";
RL BMC Genomics 15:312-312(2014).
RN [3] {ECO:0000313|EnsemblPlants:KEH44019}
RP IDENTIFICATION.
RC STRAIN=cv. Jemalong A17 {ECO:0000313|EnsemblPlants:KEH44019};
RG EnsemblPlants;
RL Submitted (APR-2015) to UniProtKB.
CC -!- SIMILARITY: Belongs to the glycosyl hydrolase 10 (cellulase F) family.
CC {ECO:0000256|ARBA:ARBA00007495}.
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DR EMBL; CM001217; KEH44019.1; -; Genomic_DNA.
DR RefSeq; XP_013469981.1; XM_013614527.1.
DR AlphaFoldDB; A0A072VPS6; -.
DR STRING; 3880.A0A072VPS6; -.
DR PaxDb; 3880-AES62759; -.
DR EnsemblPlants; KEH44019; KEH44019; MTR_1g106200.
DR GeneID; 25485345; -.
DR Gramene; KEH44019; KEH44019; MTR_1g106200.
DR eggNOG; ENOG502RD7C; Eukaryota.
DR HOGENOM; CLU_008797_4_0_1; -.
DR OrthoDB; 1328474at2759; -.
DR Proteomes; UP000002051; Chromosome 1.
DR ExpressionAtlas; A0A072VPS6; differential.
DR GO; GO:0031176; F:endo-1,4-beta-xylanase activity; IEA:UniProt.
DR GO; GO:0005975; P:carbohydrate metabolic process; IEA:InterPro.
DR Gene3D; 2.60.120.260; Galactose-binding domain-like; 1.
DR Gene3D; 3.20.20.80; Glycosidases; 1.
DR InterPro; IPR003305; CenC_carb-bd.
DR InterPro; IPR008979; Galactose-bd-like_sf.
DR InterPro; IPR044846; GH10.
DR InterPro; IPR001000; GH10_dom.
DR InterPro; IPR017853; Glycoside_hydrolase_SF.
DR PANTHER; PTHR31490:SF52; ENDO-1,4-BETA-XYLANASE 5-RELATED; 1.
DR PANTHER; PTHR31490; GLYCOSYL HYDROLASE; 1.
DR Pfam; PF02018; CBM_4_9; 1.
DR Pfam; PF00331; Glyco_hydro_10; 1.
DR SMART; SM00633; Glyco_10; 1.
DR SUPFAM; SSF51445; (Trans)glycosidases; 1.
DR SUPFAM; SSF49785; Galactose-binding domain-like; 1.
DR PROSITE; PS51760; GH10_2; 1.
PE 3: Inferred from homology;
KW Carbohydrate metabolism {ECO:0000256|ARBA:ARBA00023277};
KW Hydrolase {ECO:0000256|ARBA:ARBA00022801, ECO:0000313|EMBL:KEH44019.1};
KW Polysaccharide degradation {ECO:0000256|ARBA:ARBA00023326};
KW Reference proteome {ECO:0000313|Proteomes:UP000002051};
KW Signal {ECO:0000256|SAM:SignalP}.
FT SIGNAL 1..28
FT /evidence="ECO:0000256|SAM:SignalP"
FT CHAIN 29..581
FT /evidence="ECO:0000256|SAM:SignalP"
FT /id="PRO_5014500866"
FT DOMAIN 221..519
FT /note="GH10"
FT /evidence="ECO:0000259|PROSITE:PS51760"
SQ SEQUENCE 581 AA; 65607 MW; F39010946D05DD55 CRC64;
MKVTAKCCNL LFITTSFLLF ISGLGVHSLD YDYFATIECM KEPQRAQYGG GIIVNSGFDH
NIEGWTVFGN GTIEERISND GNRFIVASKR TQSLDSFSQT VQLEKGLIYT FSAWLQLSEG
SDTISVVFKT NGSDQLVHGG HVIAKHGCWS LLKGGIVANF SSPAEILFES NNSSVEIWAD
SVSLQPFTKK EWRSHQDNNI ERVRKSRVRF HVSNVNETAL EGATVVITQT KADFPFGCGM
NHHILTNIDY QEWFVSRFKY TTFTNEMKWY STEIIPGQEN YTISDAMLEF AKDNGISVRG
HNIFWDDEKY QPEWVKYLSP DELRKAAKKR IESVVKRYKG ELIAWDVVNE NVHFHFYEDK
LGENASELYY LKAHELDPET KLFMNEYNTI EYSGDKVVSP PNYLKKLEEI MQSGEATEIL
FAIGLQGHFA SGQPNLAYMR SGLDFLGNIG FPIWLTEASL DPQPNQAEYF EEVLREAYSH
PAVEGIIMFA GPAQAGFNST LLADTNFQTT PTGQVVDNLI LEWGSGPYTA IADSRGIVDI
SLHHGDYDVT FTHPLTQNSK KLNISVRKGF SQENIHVKMH A
//
