ID A0A072VS07_MEDTR Unreviewed; 860 AA.
AC A0A072VS07;
DT 01-OCT-2014, integrated into UniProtKB/TrEMBL.
DT 01-OCT-2014, sequence version 1.
DT 27-MAR-2024, entry version 51.
DE SubName: Full=Pentatricopeptide (PPR) repeat protein {ECO:0000313|EMBL:KEH44228.1};
DE SubName: Full=Putative tetratricopeptide-like helical domain, DYW domain-containing protein {ECO:0000313|EMBL:RHN82441.1};
GN OrderedLocusNames=MTR_1g111020 {ECO:0000313|EMBL:KEH44228.1};
GN ORFNames=MtrunA17_Chr1g0209951 {ECO:0000313|EMBL:RHN82441.1};
OS Medicago truncatula (Barrel medic) (Medicago tribuloides).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade;
OC NPAAA clade; Hologalegina; IRL clade; Trifolieae; Medicago.
OX NCBI_TaxID=3880 {ECO:0000313|EMBL:KEH44228.1, ECO:0000313|Proteomes:UP000002051};
RN [1] {ECO:0000313|EMBL:KEH44228.1, ECO:0000313|Proteomes:UP000002051}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=A17 {ECO:0000313|EMBL:KEH44228.1}, and cv. Jemalong A17
RC {ECO:0000313|EnsemblPlants:KEH44228,
RC ECO:0000313|Proteomes:UP000002051};
RX PubMed=22089132; DOI=10.1038/nature10625;
RA Young N.D., Debelle F., Oldroyd G.E., Geurts R., Cannon S.B., Udvardi M.K.,
RA Benedito V.A., Mayer K.F., Gouzy J., Schoof H., Van de Peer Y., Proost S.,
RA Cook D.R., Meyers B.C., Spannagl M., Cheung F., De Mita S.,
RA Krishnakumar V., Gundlach H., Zhou S., Mudge J., Bharti A.K., Murray J.D.,
RA Naoumkina M.A., Rosen B., Silverstein K.A., Tang H., Rombauts S.,
RA Zhao P.X., Zhou P., Barbe V., Bardou P., Bechner M., Bellec A., Berger A.,
RA Berges H., Bidwell S., Bisseling T., Choisne N., Couloux A., Denny R.,
RA Deshpande S., Dai X., Doyle J.J., Dudez A.M., Farmer A.D., Fouteau S.,
RA Franken C., Gibelin C., Gish J., Goldstein S., Gonzalez A.J., Green P.J.,
RA Hallab A., Hartog M., Hua A., Humphray S.J., Jeong D.H., Jing Y.,
RA Jocker A., Kenton S.M., Kim D.J., Klee K., Lai H., Lang C., Lin S.,
RA Macmil S.L., Magdelenat G., Matthews L., McCorrison J., Monaghan E.L.,
RA Mun J.H., Najar F.Z., Nicholson C., Noirot C., O'Bleness M., Paule C.R.,
RA Poulain J., Prion F., Qin B., Qu C., Retzel E.F., Riddle C., Sallet E.,
RA Samain S., Samson N., Sanders I., Saurat O., Scarpelli C., Schiex T.,
RA Segurens B., Severin A.J., Sherrier D.J., Shi R., Sims S., Singer S.R.,
RA Sinharoy S., Sterck L., Viollet A., Wang B.B., Wang K., Wang M., Wang X.,
RA Warfsmann J., Weissenbach J., White D.D., White J.D., Wiley G.B.,
RA Wincker P., Xing Y., Yang L., Yao Z., Ying F., Zhai J., Zhou L., Zuber A.,
RA Denarie J., Dixon R.A., May G.D., Schwartz D.C., Rogers J., Quetier F.,
RA Town C.D., Roe B.A.;
RT "The Medicago genome provides insight into the evolution of rhizobial
RT symbioses.";
RL Nature 480:520-524(2011).
RN [2] {ECO:0000313|EMBL:KEH44228.1, ECO:0000313|Proteomes:UP000002051}
RP GENOME REANNOTATION.
RC STRAIN=A17 {ECO:0000313|EMBL:KEH44228.1}, and cv. Jemalong A17
RC {ECO:0000313|EnsemblPlants:KEH44228,
RC ECO:0000313|Proteomes:UP000002051};
RX PubMed=24767513; DOI=10.1186/1471-2164-15-312;
RA Tang H., Krishnakumar V., Bidwell S., Rosen B., Chan A., Zhou S.,
RA Gentzbittel L., Childs K.L., Yandell M., Gundlach H., Mayer K.F.,
RA Schwartz D.C., Town C.D.;
RT "An improved genome release (version Mt4.0) for the model legume Medicago
RT truncatula.";
RL BMC Genomics 15:312-312(2014).
RN [3] {ECO:0000313|EnsemblPlants:KEH44228}
RP IDENTIFICATION.
RC STRAIN=cv. Jemalong A17 {ECO:0000313|EnsemblPlants:KEH44228};
RG EnsemblPlants;
RL Submitted (APR-2015) to UniProtKB.
RN [4] {ECO:0000313|Proteomes:UP000265566}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Jemalong A17 {ECO:0000313|Proteomes:UP000265566};
RX PubMed=30397259; DOI=10.1038/s41477-018-0286-7;
RA Pecrix Y., Staton S.E., Sallet E., Lelandais-Briere C., Moreau S.,
RA Carrere S., Blein T., Jardinaud M.F., Latrasse D., Zouine M., Zahm M.,
RA Kreplak J., Mayjonade B., Satge C., Perez M., Cauet S., Marande W.,
RA Chantry-Darmon C., Lopez-Roques C., Bouchez O., Berard A., Debelle F.,
RA Munos S., Bendahmane A., Berges H., Niebel A., Buitink J., Frugier F.,
RA Benhamed M., Crespi M., Gouzy J., Gamas P.;
RT "Whole-genome landscape of Medicago truncatula symbiotic genes.";
RL Nat. Plants 4:1017-1025(2018).
RN [5] {ECO:0000313|EMBL:RHN82441.1}
RP NUCLEOTIDE SEQUENCE.
RC TISSUE=Leaves {ECO:0000313|EMBL:RHN82441.1};
RA Pecrix Y., Gamas P., Carrere S.;
RT "Whole-genome landscape of Medicago truncatula symbiotic genes.";
RL Nat. Plants 0:0-0(2018).
CC -!- SIMILARITY: Belongs to the PPR family. PCMP-H subfamily.
CC {ECO:0000256|ARBA:ARBA00006643}.
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DR EMBL; CM001217; KEH44228.1; -; Genomic_DNA.
DR EMBL; PSQE01000001; RHN82441.1; -; Genomic_DNA.
DR RefSeq; XP_013470190.1; XM_013614736.1.
DR AlphaFoldDB; A0A072VS07; -.
DR EnsemblPlants; KEH44228; KEH44228; MTR_1g111020.
DR Gramene; KEH44228; KEH44228; MTR_1g111020.
DR HOGENOM; CLU_002706_15_1_1; -.
DR OrthoDB; 459799at2759; -.
DR Proteomes; UP000002051; Chromosome 1.
DR Proteomes; UP000265566; Chromosome 1.
DR ExpressionAtlas; A0A072VS07; differential.
DR GO; GO:0003723; F:RNA binding; IEA:InterPro.
DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro.
DR GO; GO:0009451; P:RNA modification; IEA:InterPro.
DR Gene3D; 1.25.40.10; Tetratricopeptide repeat domain; 6.
DR InterPro; IPR032867; DYW_dom.
DR InterPro; IPR046848; E_motif.
DR InterPro; IPR046849; Eplus_motif.
DR InterPro; IPR002885; Pentatricopeptide_rpt.
DR InterPro; IPR045215; PPR_prot_At1g15510.
DR InterPro; IPR011990; TPR-like_helical_dom_sf.
DR NCBIfam; TIGR00756; PPR; 5.
DR PANTHER; PTHR24015; OS07G0578800 PROTEIN-RELATED; 1.
DR PANTHER; PTHR24015:SF1774; OS09G0251500 PROTEIN; 1.
DR Pfam; PF14432; DYW_deaminase; 1.
DR Pfam; PF20431; E_motif; 1.
DR Pfam; PF20430; Eplus_motif; 1.
DR Pfam; PF01535; PPR; 6.
DR Pfam; PF13041; PPR_2; 5.
DR PROSITE; PS51375; PPR; 5.
PE 3: Inferred from homology;
KW Reference proteome {ECO:0000313|Proteomes:UP000002051};
KW Repeat {ECO:0000256|ARBA:ARBA00022737}.
FT REPEAT 47..81
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT REPEAT 148..182
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT REPEAT 218..252
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT REPEAT 452..486
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT REPEAT 553..587
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT DOMAIN 768..860
FT /note="DYW"
FT /evidence="ECO:0000259|Pfam:PF14432"
SQ SEQUENCE 860 AA; 95637 MW; E46BE69CE10886EB CRC64;
MELHTHLIKF GFSRHSSLRN HLLTFYSNSR RFGYACNLLD QSTEPRTVVS WSALISRYVQ
NGFHKEALLA FNEMCTLGVK SNEFTFPTVL KACSIKKDLN MGKKVHAMTV VSGFESDAFV
SNTLVVMYAK CGQFSDSKKL FGMILEPGVV SWNALFSCHV QSDFLAETVD LFKRMVEGKV
RPNEYSLSII LNACAGLRDG GIGRTVHGLL MKLGHGLDQF SANALVDMYA KAGRIEDAVD
VFREMIHPDT VSWNAIIAGC VLHEYNDLAL ILLNEMKKSG SCPNVFTLSS ALKACAAMGL
KDLGRQIHSC SVKIDSDSDL FVAVGLIDLY SKCEMMDDAR RAYDLMPTKD HIIAGNALIS
GYSQCGDDEQ AISLFFELHH ENIDFNQTTL STVLKSVASL QQIKVCKQIH TLSIKCGIYS
DFYVINSLLD TYGKCSHIDE ASKIFEERTW EDLVAYTSMI TAYSQHGDAE EALKLYLQMQ
VADIKPDPFV CSSLLNACAN LSAYEQGKQL HVHAIKFGFM SDIFASNSLV NMYAKCGSIE
DADRAFSEIP QRGIVSWSAM IGGLAQHGHG KEALIMFNQM LKDCVSPNHI TLVSVLCACN
HAGLVNEGKQ YFETMEEKFG IKPTQEHHAC MIDLLGRSGK LNEAVELVNS IPFEADGSVW
GALLGAARIH KNVELGEKAA ERLFTLEPDK SGTLVLLANI YASAGMWENV ANVRKVMQNS
NVKKEPGMSW IEVKDRIHTF IVGDRNHSRS DEIFAKLDEL SELLSKAGYS PIIETDIHNV
ERSEKEKLLY HHSEKLAVAF GLIVTPPGAP IRVKKNLRVC VDCHTFLKLV SKLVSRQIVV
RDINRFHHFK NGSCSCGDYW
//
