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Database: UniProt
Entry: A0A077EEP3_9FLAO
LinkDB: A0A077EEP3_9FLAO
Original site: A0A077EEP3_9FLAO 
ID   A0A077EEP3_9FLAO        Unreviewed;       288 AA.
AC   A0A077EEP3;
DT   29-OCT-2014, integrated into UniProtKB/TrEMBL.
DT   29-OCT-2014, sequence version 1.
DT   24-JAN-2024, entry version 54.
DE   SubName: Full=RNA polymerase sigma factor RpoD {ECO:0000313|EMBL:AIL46041.1};
GN   ORFNames=BD94_2266 {ECO:0000313|EMBL:AIL46041.1};
OS   Elizabethkingia anophelis NUHP1.
OC   Bacteria; Bacteroidota; Flavobacteriia; Flavobacteriales; Weeksellaceae;
OC   Elizabethkingia.
OX   NCBI_TaxID=1338011 {ECO:0000313|EMBL:AIL46041.1, ECO:0000313|Proteomes:UP000028933};
RN   [1] {ECO:0000313|EMBL:AIL46041.1}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=NUHP1 {ECO:0000313|EMBL:AIL46041.1};
RX   PubMed=24012265; DOI=10.1016/S0140-6736(13)61858-9;
RA   Teo J., Tan S.Y., Tay M., Ding Y., Kjelleberg S., Givskov M., Lin R.T.,
RA   Yang L.;
RT   "First case of E anophelis outbreak in an intensive-care unit.";
RL   Lancet 382:855-856(2013).
RN   [2] {ECO:0000313|EMBL:AIL46041.1}
RP   NUCLEOTIDE SEQUENCE.
RC   STRAIN=NUHP1 {ECO:0000313|EMBL:AIL46041.1};
RX   PubMed=26019164; DOI=10.1093/gbe/evv101;
RA   Li Y., Liu Y., Chew S.C., Tay M., Salido M.M., Teo J., Lauro F.M.,
RA   Givskov M., Yang L.;
RT   "Complete Genome Sequence and Transcriptomic Analysis of the Novel Pathogen
RT   Elizabethkingia anophelis in Response to Oxidative Stress.";
RL   Genome Biol. Evol. 7:1676-1685(2015).
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DR   EMBL; CP007547; AIL46041.1; -; Genomic_DNA.
DR   RefSeq; WP_009088483.1; NZ_CP007547.1.
DR   AlphaFoldDB; A0A077EEP3; -.
DR   STRING; 1338011.BD94_2266; -.
DR   GeneID; 78270393; -.
DR   KEGG; eao:BD94_2266; -.
DR   eggNOG; COG0568; Bacteria.
DR   HOGENOM; CLU_014793_3_5_10; -.
DR   Proteomes; UP000028933; Chromosome.
DR   GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR   GO; GO:0016987; F:sigma factor activity; IEA:UniProtKB-KW.
DR   GO; GO:0006352; P:DNA-templated transcription initiation; IEA:InterPro.
DR   CDD; cd06171; Sigma70_r4; 1.
DR   Gene3D; 1.10.601.10; RNA Polymerase Primary Sigma Factor; 1.
DR   Gene3D; 1.10.10.10; Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain; 2.
DR   InterPro; IPR014284; RNA_pol_sigma-70_dom.
DR   InterPro; IPR000943; RNA_pol_sigma70.
DR   InterPro; IPR009042; RNA_pol_sigma70_r1_2.
DR   InterPro; IPR007627; RNA_pol_sigma70_r2.
DR   InterPro; IPR007624; RNA_pol_sigma70_r3.
DR   InterPro; IPR007630; RNA_pol_sigma70_r4.
DR   InterPro; IPR013325; RNA_pol_sigma_r2.
DR   InterPro; IPR013324; RNA_pol_sigma_r3/r4-like.
DR   InterPro; IPR036388; WH-like_DNA-bd_sf.
DR   NCBIfam; TIGR02937; sigma70-ECF; 1.
DR   PANTHER; PTHR30603; RNA POLYMERASE SIGMA FACTOR RPO; 1.
DR   PANTHER; PTHR30603:SF47; RNA POLYMERASE SIGMA FACTOR SIGD, CHLOROPLASTIC; 1.
DR   Pfam; PF00140; Sigma70_r1_2; 1.
DR   Pfam; PF04542; Sigma70_r2; 1.
DR   Pfam; PF04539; Sigma70_r3; 1.
DR   Pfam; PF04545; Sigma70_r4; 1.
DR   PIRSF; PIRSF000770; RNA_pol_sigma-SigE/K; 1.
DR   PRINTS; PR00046; SIGMA70FCT.
DR   SUPFAM; SSF88946; Sigma2 domain of RNA polymerase sigma factors; 1.
DR   SUPFAM; SSF88659; Sigma3 and sigma4 domains of RNA polymerase sigma factors; 2.
PE   4: Predicted;
KW   DNA-binding {ECO:0000256|ARBA:ARBA00023125};
KW   Sigma factor {ECO:0000256|ARBA:ARBA00023082};
KW   Transcription {ECO:0000256|ARBA:ARBA00023163};
KW   Transcription regulation {ECO:0000256|ARBA:ARBA00023015}.
FT   DOMAIN          17..47
FT                   /note="RNA polymerase sigma-70 region 1.2"
FT                   /evidence="ECO:0000259|Pfam:PF00140"
FT   DOMAIN          54..123
FT                   /note="RNA polymerase sigma-70 region 2"
FT                   /evidence="ECO:0000259|Pfam:PF04542"
FT   DOMAIN          135..207
FT                   /note="RNA polymerase sigma-70 region 3"
FT                   /evidence="ECO:0000259|Pfam:PF04539"
FT   DOMAIN          222..275
FT                   /note="RNA polymerase sigma-70 region 4"
FT                   /evidence="ECO:0000259|Pfam:PF04545"
SQ   SEQUENCE   288 AA;  32973 MW;  B80F400115598B15 CRC64;
     MRQLKITKQV TNRETASLDK YLQEIGKVEL ITADEEVDLA QKIRAGDRVA LEKLIKANLR
     FVVSVSKQYQ NQGLSLPDLI NEGNLGLMKA AKRYDETRGF KFISYAVWWI RQSILQALAE
     QSRIVRLPLN KIGSINKINK AYAHLEQENE RPPSPEELAE VLDMSEEDIK ESMKNSGRHL
     SMDAPLVEGE DSNLYDVLRS GESPSPDKDL MLESLQIEIE RALNTLTPRE ADLVRLYFGL
     NGKHPMTLEE IGETFDLTRE RVRQIKEKAI KRLKHNSRSK ILKSYLGK
//
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