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Database: UniProt
Entry: A0A078F6A9_BRANA
LinkDB: A0A078F6A9_BRANA
Original site: A0A078F6A9_BRANA 
ID   A0A078F6A9_BRANA        Unreviewed;       377 AA.
AC   A0A078F6A9;
DT   29-OCT-2014, integrated into UniProtKB/TrEMBL.
DT   29-OCT-2014, sequence version 1.
DT   24-JAN-2024, entry version 34.
DE   SubName: Full=BnaA05g28100D protein {ECO:0000313|EMBL:CDY08574.1};
GN   Name=BnaA05g28100D {ECO:0000313|EMBL:CDY08574.1};
GN   ORFNames=GSBRNA2T00000363001 {ECO:0000313|EMBL:CDY08574.1};
OS   Brassica napus (Rape).
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC   rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica.
OX   NCBI_TaxID=3708 {ECO:0000313|EMBL:CDY08574.1, ECO:0000313|Proteomes:UP000028999};
RN   [1] {ECO:0000313|EMBL:CDY08574.1, ECO:0000313|Proteomes:UP000028999}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=cv. Darmor-bzh {ECO:0000313|Proteomes:UP000028999};
RX   PubMed=25146293; DOI=10.1126/science.1253435;
RA   Chalhoub B., Denoeud F., Liu S., Parkin I.A., Tang H., Wang X., Chiquet J.,
RA   Belcram H., Tong C., Samans B., Correa M., Da Silva C., Just J.,
RA   Falentin C., Koh C.S., Le Clainche I., Bernard M., Bento P., Noel B.,
RA   Labadie K., Alberti A., Charles M., Arnaud D., Guo H., Daviaud C.,
RA   Alamery S., Jabbari K., Zhao M., Edger P.P., Chelaifa H., Tack D.,
RA   Lassalle G., Mestiri I., Schnel N., Le Paslier M.C., Fan G., Renault V.,
RA   Bayer P.E., Golicz A.A., Manoli S., Lee T.H., Thi V.H., Chalabi S., Hu Q.,
RA   Fan C., Tollenaere R., Lu Y., Battail C., Shen J., Sidebottom C.H.,
RA   Wang X., Canaguier A., Chauveau A., Berard A., Deniot G., Guan M., Liu Z.,
RA   Sun F., Lim Y.P., Lyons E., Town C.D., Bancroft I., Wang X., Meng J.,
RA   Ma J., Pires J.C., King G.J., Brunel D., Delourme R., Renard M., Aury J.M.,
RA   Adams K.L., Batley J., Snowdon R.J., Tost J., Edwards D., Zhou Y., Hua W.,
RA   Sharpe A.G., Paterson A.H., Guan C., Wincker P.;
RT   "Plant genetics. Early allopolyploid evolution in the post-Neolithic
RT   Brassica napus oilseed genome.";
RL   Science 345:950-953(2014).
CC   -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|ARBA:ARBA00004123,
CC       ECO:0000256|PROSITE-ProRule:PRU00649}.
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DR   EMBL; LK031986; CDY08574.1; -; Genomic_DNA.
DR   AlphaFoldDB; A0A078F6A9; -.
DR   STRING; 3708.A0A078F6A9; -.
DR   PaxDb; 3708-A0A078F6A9; -.
DR   EnsemblPlants; CDY08574; CDY08574; GSBRNA2T00000363001.
DR   Gramene; CDY08574; CDY08574; GSBRNA2T00000363001.
DR   OMA; PEGTHEA; -.
DR   OrthoDB; 4793at2759; -.
DR   Proteomes; UP000028999; Unassembled WGS sequence.
DR   GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
DR   CDD; cd00183; TFIIS_I; 1.
DR   Gene3D; 1.20.930.10; Conserved domain common to transcription factors TFIIS, elongin A, CRSP70; 1.
DR   InterPro; IPR044805; MD26A/B-like.
DR   InterPro; IPR003617; TFIIS/CRSP70_N_sub.
DR   InterPro; IPR035441; TFIIS/LEDGF_dom_sf.
DR   InterPro; IPR017923; TFIIS_N.
DR   PANTHER; PTHR46554; MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 26A-RELATED; 1.
DR   PANTHER; PTHR46554:SF2; TFIIS N-TERMINAL DOMAIN-CONTAINING PROTEIN; 1.
DR   Pfam; PF08711; Med26; 1.
DR   SMART; SM00509; TFS2N; 1.
DR   SUPFAM; SSF47676; Conserved domain common to transcription factors TFIIS, elongin A, CRSP70; 1.
DR   PROSITE; PS51319; TFIIS_N; 1.
PE   4: Predicted;
KW   Nucleus {ECO:0000256|ARBA:ARBA00023242, ECO:0000256|PROSITE-
KW   ProRule:PRU00649}; Reference proteome {ECO:0000313|Proteomes:UP000028999}.
FT   DOMAIN          101..176
FT                   /note="TFIIS N-terminal"
FT                   /evidence="ECO:0000259|PROSITE:PS51319"
FT   REGION          68..91
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   REGION          232..299
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   REGION          357..377
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        234..255
FT                   /note="Basic and acidic residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        265..299
FT                   /note="Basic and acidic residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ   SEQUENCE   377 AA;  43061 MW;  5CCC55FD2475A7E6 CRC64;
     MKPSEHSLDN WRDYFRRGDS DIFGIINHAI ILAAADFPKE FKSRRDGIAQ LLFSCNASRS
     CIGCGHEDNN HETVGVSDDS GGGGGDEEDE KKLNDDEIVV VEVMRIRDIL LNRDDESNSV
     LLRSLRKLES MSLSVDLLKD TEIGKAVNGL RRHGSDEIRE LAKALFAEWK DLVDQWMNSV
     NEVAGDEGTP ESANYSVVDE AEAFPSPPHD LDFLAPEPTG FELSQILDGL DCDGNPRHSV
     EPKRKTMRRP EGTHEANLVG RYNKNQQTRR EEIDARPMKH SATVEDEHRR QPKQTREQMV
     HPIQRKPIVI PEQKRNSQQD KLKALDLDAR FEFAKRKLQE SYQQHDKAKR QRTIQVLETI
     PKQGKAHKPQ LKRPVRR
//
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