ID A0A078F6J9_BRANA Unreviewed; 787 AA.
AC A0A078F6J9;
DT 29-OCT-2014, integrated into UniProtKB/TrEMBL.
DT 29-OCT-2014, sequence version 1.
DT 24-JAN-2024, entry version 27.
DE RecName: Full=Splicing factor Cactin {ECO:0000256|ARBA:ARBA00034534};
GN Name=BnaC08g43610D {ECO:0000313|EMBL:CDY10090.1};
GN ORFNames=GSBRNA2T00031890001 {ECO:0000313|EMBL:CDY10090.1};
OS Brassica napus (Rape).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica.
OX NCBI_TaxID=3708 {ECO:0000313|EMBL:CDY10090.1, ECO:0000313|Proteomes:UP000028999};
RN [1] {ECO:0000313|EMBL:CDY10090.1, ECO:0000313|Proteomes:UP000028999}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Darmor-bzh {ECO:0000313|Proteomes:UP000028999};
RX PubMed=25146293; DOI=10.1126/science.1253435;
RA Chalhoub B., Denoeud F., Liu S., Parkin I.A., Tang H., Wang X., Chiquet J.,
RA Belcram H., Tong C., Samans B., Correa M., Da Silva C., Just J.,
RA Falentin C., Koh C.S., Le Clainche I., Bernard M., Bento P., Noel B.,
RA Labadie K., Alberti A., Charles M., Arnaud D., Guo H., Daviaud C.,
RA Alamery S., Jabbari K., Zhao M., Edger P.P., Chelaifa H., Tack D.,
RA Lassalle G., Mestiri I., Schnel N., Le Paslier M.C., Fan G., Renault V.,
RA Bayer P.E., Golicz A.A., Manoli S., Lee T.H., Thi V.H., Chalabi S., Hu Q.,
RA Fan C., Tollenaere R., Lu Y., Battail C., Shen J., Sidebottom C.H.,
RA Wang X., Canaguier A., Chauveau A., Berard A., Deniot G., Guan M., Liu Z.,
RA Sun F., Lim Y.P., Lyons E., Town C.D., Bancroft I., Wang X., Meng J.,
RA Ma J., Pires J.C., King G.J., Brunel D., Delourme R., Renard M., Aury J.M.,
RA Adams K.L., Batley J., Snowdon R.J., Tost J., Edwards D., Zhou Y., Hua W.,
RA Sharpe A.G., Paterson A.H., Guan C., Wincker P.;
RT "Plant genetics. Early allopolyploid evolution in the post-Neolithic
RT Brassica napus oilseed genome.";
RL Science 345:950-953(2014).
CC -!- SIMILARITY: Belongs to the CACTIN family.
CC {ECO:0000256|ARBA:ARBA00006895}.
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DR EMBL; LK032000; CDY10090.1; -; Genomic_DNA.
DR AlphaFoldDB; A0A078F6J9; -.
DR STRING; 3708.A0A078F6J9; -.
DR PaxDb; 3708-A0A078F6J9; -.
DR EnsemblPlants; CDY10090; CDY10090; GSBRNA2T00031890001.
DR Gramene; CDY10090; CDY10090; GSBRNA2T00031890001.
DR OMA; QREDDMY; -.
DR Proteomes; UP000028999; Unassembled WGS sequence.
DR GO; GO:0005737; C:cytoplasm; IBA:GO_Central.
DR GO; GO:0005681; C:spliceosomal complex; IBA:GO_Central.
DR GO; GO:0045292; P:mRNA cis splicing, via spliceosome; IBA:GO_Central.
DR InterPro; IPR019134; Cactin_C.
DR InterPro; IPR018816; Cactin_central.
DR PANTHER; PTHR21737:SF4; CACTIN; 1.
DR PANTHER; PTHR21737; POLYGLUTAMINE BINDING PROTEIN 1/MARVEL MEMBRANE-ASSOCIATING DOMAIN CONTAINING 3; 1.
DR Pfam; PF10312; Cactin_mid; 1.
DR Pfam; PF09732; CactinC_cactus; 1.
DR SMART; SM01050; CactinC_cactus; 1.
PE 3: Inferred from homology;
KW Coiled coil {ECO:0000256|SAM:Coils};
KW Reference proteome {ECO:0000313|Proteomes:UP000028999}.
FT DOMAIN 306..503
FT /note="Splicing factor cactin central"
FT /evidence="ECO:0000259|Pfam:PF10312"
FT DOMAIN 663..787
FT /note="Splicing factor Cactin C-terminal"
FT /evidence="ECO:0000259|Pfam:PF09732"
FT REGION 98..240
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COILED 280..314
FT /evidence="ECO:0000256|SAM:Coils"
FT COMPBIAS 98..124
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 169..211
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 223..240
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 787 AA; 91107 MW; B325D6F64D5F1572 CRC64;
MRKRDLREER EEFPWCVLLL DVEGHSEALS DGVRCGLSLV ALELALCVVE LAIVCSSCGR
LKPRFRGSLA KAVSLKRSVK IAAVEGSELC YRGRRSLSTV AQTPHSHATD SRSPSPTSMG
SHGKSRSGKQ KKKKRRDESE SESESYSDGS DDLSPPRRRK GSRSSSSRSR RRRSSDDDSS
DSDGGRKSKK RTSSKKPSEE EIKEYLAKKA QKKALRAAKK LKTQSVSGYS NDSNPFGDSN
LTETFVWRKK IEKDVHHGVP LDEFSVKAEK RRRGERMTEV EKVKKRREER AVEKARHEEE
MALLARERAR AEFQDWEKKE EEFHFDQSKV RSEIRLREGR LKPIDVLCKH LDGSDDMDIE
LSEPYMVFKG LNVKDMEELR DDIKMYLDSD RATPTRVQYW EALIVVCDWE LAEARKRDAL
DRARVRGEEP PAELLAQERG LHAGVEADVR KLLDGKTHSE LLELQLDIES QLRSGSAKVV
EYWEAVLKRL DIYKAKACLK EIHAEMLRRH LHRLEQLSEG DEEDVEVNRR LAPVMEENEE
EEINDTNLSD AEEAFSPEPV MEEEEEADVE AEAAGSFSPE LMHGDDREEA IDPEEDRKLL
EMKRMVVMEK QKKRIKEAMD SKPPPVEDNF KVKAMKAMGA MEEGDAVFGS NAEVNLDSEV
YWWHDKYRPR KPKYFNRVHT GYEWNKYNQT HYDHDNPPPK IVQGYKFNIF YPDLVDKIKA
PIYTIEKDGT SSETCMIRFH AGPPYEDIAF RIVNKEWEYS HKKGFKCTFE RGILHLYINF
KRHRYRR
//
