ID A0A078GHS9_BRANA Unreviewed; 201 AA.
AC A0A078GHS9;
DT 29-OCT-2014, integrated into UniProtKB/TrEMBL.
DT 29-OCT-2014, sequence version 1.
DT 27-MAR-2024, entry version 34.
DE SubName: Full=(rape) hypothetical protein {ECO:0000313|EMBL:CAF2102979.1};
DE SubName: Full=BnaA05g31160D protein {ECO:0000313|EMBL:CDY24717.1};
GN Name=BnaA05g31160D {ECO:0000313|EMBL:CDY24717.1};
GN Synonyms=BnabHLH065 {ECO:0000313|EMBL:CAA8287350.1};
GN ORFNames=DARMORV10_A05P41880.1 {ECO:0000313|EMBL:CAF2102979.1},
GN GSBRNA2T00027106001 {ECO:0000313|EMBL:CDY24717.1};
OS Brassica napus (Rape).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica.
OX NCBI_TaxID=3708 {ECO:0000313|EMBL:CDY24717.1, ECO:0000313|Proteomes:UP000028999};
RN [1] {ECO:0000313|EMBL:CDY24717.1, ECO:0000313|Proteomes:UP000028999}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Darmor-bzh {ECO:0000313|Proteomes:UP000028999};
RX PubMed=25146293; DOI=10.1126/science.1253435;
RA Chalhoub B., Denoeud F., Liu S., Parkin I.A., Tang H., Wang X., Chiquet J.,
RA Belcram H., Tong C., Samans B., Correa M., Da Silva C., Just J.,
RA Falentin C., Koh C.S., Le Clainche I., Bernard M., Bento P., Noel B.,
RA Labadie K., Alberti A., Charles M., Arnaud D., Guo H., Daviaud C.,
RA Alamery S., Jabbari K., Zhao M., Edger P.P., Chelaifa H., Tack D.,
RA Lassalle G., Mestiri I., Schnel N., Le Paslier M.C., Fan G., Renault V.,
RA Bayer P.E., Golicz A.A., Manoli S., Lee T.H., Thi V.H., Chalabi S., Hu Q.,
RA Fan C., Tollenaere R., Lu Y., Battail C., Shen J., Sidebottom C.H.,
RA Wang X., Canaguier A., Chauveau A., Berard A., Deniot G., Guan M., Liu Z.,
RA Sun F., Lim Y.P., Lyons E., Town C.D., Bancroft I., Wang X., Meng J.,
RA Ma J., Pires J.C., King G.J., Brunel D., Delourme R., Renard M., Aury J.M.,
RA Adams K.L., Batley J., Snowdon R.J., Tost J., Edwards D., Zhou Y., Hua W.,
RA Sharpe A.G., Paterson A.H., Guan C., Wincker P.;
RT "Plant genetics. Early allopolyploid evolution in the post-Neolithic
RT Brassica napus oilseed genome.";
RL Science 345:950-953(2014).
RN [2] {ECO:0000313|EMBL:CDY24717.1}
RP NUCLEOTIDE SEQUENCE.
RA Genoscope - CEA;
RL Submitted (JUN-2014) to the EMBL/GenBank/DDBJ databases.
RN [3] {ECO:0000313|EMBL:CAA8287350.1}
RP NUCLEOTIDE SEQUENCE.
RG Zhejiang university;
RL Submitted (JAN-2020) to the EMBL/GenBank/DDBJ databases.
RN [4] {ECO:0000313|EMBL:CAF2102979.1}
RP NUCLEOTIDE SEQUENCE.
RG Genoscope - CEA;
RA William W.;
RL Submitted (JAN-2021) to the EMBL/GenBank/DDBJ databases.
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|ARBA:ARBA00004123}.
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DR EMBL; LR757121; CAA8287350.1; -; Genomic_DNA.
DR EMBL; LR758344; CAA8391959.1; -; Genomic_DNA.
DR EMBL; LR759303; CAA8403592.1; -; Genomic_DNA.
DR EMBL; HG994359; CAF2102979.1; -; Genomic_DNA.
DR EMBL; LK032162; CDY24717.1; -; Genomic_DNA.
DR RefSeq; XP_013732673.1; XM_013877219.1.
DR SMR; A0A078GHS9; -.
DR STRING; 3708.A0A078GHS9; -.
DR PaxDb; 3708-A0A078GHS9; -.
DR EnsemblPlants; CDY24717; CDY24717; GSBRNA2T00027106001.
DR GeneID; 106436260; -.
DR Gramene; CDY24717; CDY24717; GSBRNA2T00027106001.
DR KEGG; bna:106436260; -.
DR OMA; HINMCKL; -.
DR OrthoDB; 464969at2759; -.
DR Proteomes; UP000028999; Unassembled WGS sequence.
DR GO; GO:0005634; C:nucleus; IBA:GO_Central.
DR GO; GO:0003700; F:DNA-binding transcription factor activity; IEA:InterPro.
DR GO; GO:0046983; F:protein dimerization activity; IEA:InterPro.
DR GO; GO:0010052; P:guard cell differentiation; IEA:InterPro.
DR GO; GO:0045893; P:positive regulation of DNA-templated transcription; IBA:GO_Central.
DR GO; GO:0010374; P:stomatal complex development; IBA:GO_Central.
DR CDD; cd11448; bHLH_AtFAMA_like; 1.
DR Gene3D; 4.10.280.10; Helix-loop-helix DNA-binding domain; 1.
DR InterPro; IPR011598; bHLH_dom.
DR InterPro; IPR044283; FAMA/SPEECHLESS/MUTE.
DR InterPro; IPR036638; HLH_DNA-bd_sf.
DR PANTHER; PTHR46684:SF9; BHLH DOMAIN-CONTAINING PROTEIN; 1.
DR PANTHER; PTHR46684; TRANSCRIPTION FACTOR FAMA; 1.
DR Pfam; PF00010; HLH; 1.
DR SMART; SM00353; HLH; 1.
DR SUPFAM; SSF47459; HLH, helix-loop-helix DNA-binding domain; 1.
DR PROSITE; PS50888; BHLH; 1.
PE 4: Predicted;
KW Nucleus {ECO:0000256|ARBA:ARBA00023242};
KW Reference proteome {ECO:0000313|Proteomes:UP000028999};
KW Transcription {ECO:0000256|ARBA:ARBA00023163};
KW Transcription regulation {ECO:0000256|ARBA:ARBA00023015}.
FT DOMAIN 1..49
FT /note="BHLH"
FT /evidence="ECO:0000259|PROSITE:PS50888"
SQ SEQUENCE 201 AA; 22794 MW; B7316F7972E01ADD CRC64;
MSHIAVERNR RRQMNEHLKS LRSLTPCFYI KRGDQASIIG GVIEFIKEMQ QLVQVLESKK
RRKTLNRPSS PYDHQTVEPS ILAATPNATT RMPFSQIENV MTTSTFKEVG ACSNSHHANV
EAKISGSNVV LRVVSWRNEG QLVKIISVLE KLSFQVLHLN ISCMEESVLY FFVVKIGLEC
HLSLEELTLE VQKSFVPEAI V
//
