ID A0A078HVK6_BRANA Unreviewed; 755 AA.
AC A0A078HVK6;
DT 29-OCT-2014, integrated into UniProtKB/TrEMBL.
DT 29-OCT-2014, sequence version 1.
DT 24-JAN-2024, entry version 31.
DE SubName: Full=BnaCnng10200D protein {ECO:0000313|EMBL:CDY41384.1};
GN Name=BnaCnng10200D {ECO:0000313|EMBL:CDY41384.1};
GN ORFNames=GSBRNA2T00072967001 {ECO:0000313|EMBL:CDY41384.1};
OS Brassica napus (Rape).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica.
OX NCBI_TaxID=3708 {ECO:0000313|EMBL:CDY41384.1, ECO:0000313|Proteomes:UP000028999};
RN [1] {ECO:0000313|EMBL:CDY41384.1, ECO:0000313|Proteomes:UP000028999}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Darmor-bzh {ECO:0000313|Proteomes:UP000028999};
RX PubMed=25146293; DOI=10.1126/science.1253435;
RA Chalhoub B., Denoeud F., Liu S., Parkin I.A., Tang H., Wang X., Chiquet J.,
RA Belcram H., Tong C., Samans B., Correa M., Da Silva C., Just J.,
RA Falentin C., Koh C.S., Le Clainche I., Bernard M., Bento P., Noel B.,
RA Labadie K., Alberti A., Charles M., Arnaud D., Guo H., Daviaud C.,
RA Alamery S., Jabbari K., Zhao M., Edger P.P., Chelaifa H., Tack D.,
RA Lassalle G., Mestiri I., Schnel N., Le Paslier M.C., Fan G., Renault V.,
RA Bayer P.E., Golicz A.A., Manoli S., Lee T.H., Thi V.H., Chalabi S., Hu Q.,
RA Fan C., Tollenaere R., Lu Y., Battail C., Shen J., Sidebottom C.H.,
RA Wang X., Canaguier A., Chauveau A., Berard A., Deniot G., Guan M., Liu Z.,
RA Sun F., Lim Y.P., Lyons E., Town C.D., Bancroft I., Wang X., Meng J.,
RA Ma J., Pires J.C., King G.J., Brunel D., Delourme R., Renard M., Aury J.M.,
RA Adams K.L., Batley J., Snowdon R.J., Tost J., Edwards D., Zhou Y., Hua W.,
RA Sharpe A.G., Paterson A.H., Guan C., Wincker P.;
RT "Plant genetics. Early allopolyploid evolution in the post-Neolithic
RT Brassica napus oilseed genome.";
RL Science 345:950-953(2014).
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DR EMBL; LK032497; CDY41384.1; -; Genomic_DNA.
DR AlphaFoldDB; A0A078HVK6; -.
DR STRING; 3708.A0A078HVK6; -.
DR PaxDb; 3708-A0A078HVK6; -.
DR EnsemblPlants; CDY41384; CDY41384; GSBRNA2T00072967001.
DR Gramene; CDY41384; CDY41384; GSBRNA2T00072967001.
DR OMA; DINEACN; -.
DR Proteomes; UP000028999; Unassembled WGS sequence.
DR GO; GO:0032044; C:DSIF complex; IBA:GO_Central.
DR GO; GO:0003729; F:mRNA binding; IBA:GO_Central.
DR GO; GO:0032784; P:regulation of DNA-templated transcription elongation; IEA:InterPro.
DR GO; GO:0006357; P:regulation of transcription by RNA polymerase II; IEA:InterPro.
DR GO; GO:0006368; P:transcription elongation by RNA polymerase II; IBA:GO_Central.
DR GO; GO:0140673; P:transcription elongation-coupled chromatin remodeling; IEA:InterPro.
DR CDD; cd06081; KOW_Spt5_1; 1.
DR CDD; cd06084; KOW_Spt5_4; 1.
DR CDD; cd09888; NGN_Euk; 1.
DR Gene3D; 2.30.30.30; -; 1.
DR Gene3D; 3.30.70.940; NusG, N-terminal domain; 1.
DR InterPro; IPR005824; KOW.
DR InterPro; IPR041973; KOW_Spt5_1.
DR InterPro; IPR041977; KOW_Spt5_4.
DR InterPro; IPR005100; NGN-domain.
DR InterPro; IPR006645; NGN-like_dom.
DR InterPro; IPR036735; NGN_dom_sf.
DR InterPro; IPR039385; NGN_Euk.
DR InterPro; IPR014722; Rib_uL2_dom2.
DR InterPro; IPR039659; SPT5.
DR PANTHER; PTHR11125:SF8; PROTEIN RNA-DIRECTED DNA METHYLATION 3; 1.
DR PANTHER; PTHR11125; SUPPRESSOR OF TY 5; 1.
DR Pfam; PF03439; Spt5-NGN; 1.
DR SMART; SM00739; KOW; 3.
DR SMART; SM00738; NGN; 1.
PE 4: Predicted;
KW Nucleus {ECO:0000256|ARBA:ARBA00023242};
KW Reference proteome {ECO:0000313|Proteomes:UP000028999};
KW Transcription {ECO:0000256|ARBA:ARBA00023163}.
FT DOMAIN 147..236
FT /note="NusG-like N-terminal"
FT /evidence="ECO:0000259|SMART:SM00738"
FT DOMAIN 241..268
FT /note="KOW"
FT /evidence="ECO:0000259|SMART:SM00739"
FT DOMAIN 465..492
FT /note="KOW"
FT /evidence="ECO:0000259|SMART:SM00739"
FT DOMAIN 573..600
FT /note="KOW"
FT /evidence="ECO:0000259|SMART:SM00739"
FT REGION 1..34
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 55..97
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 530..570
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 61..79
FT /note="Acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 535..570
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 755 AA; 84222 MW; 8A0B062A4AB02AA8 CRC64;
MDRKGKGKQI AGAGSSSGKK RKGGVEFRDE GLRISSKRKK PGVLQFFEES AEVGYYGGSS
DEECDMDDLF NDMEDEPEVE TSGKDDKGGK GKGSSSFVFP KEEEMNEDDY DRMMEERYKP
GSGFVRYAAD DVKSSIEMDA LVPTAHDPPI WKIKCAIGRE KHSVFCLMHK FVELRKIGTK
LRILSVFFVE HVKGFIFIEA DKEQDVLEAC MSLNGIYATR MMLLPKSEAP HLLTVQRKTK
TFSEGTWARI KSGKYKGDLA QVVAVSDTRG KALIKLIPRI DIAALTQKYG GGVAVQKGLN
PAPRLISSSE LEEFRPIIQV RRDRDTGMTF EHLDSLMLKD GFVYKKVSLD SLTSCGVKPS
KEEILKFTPL EEKETGDVEW ISEIYGEERR RRRVFPLAKG SHELYNLVCF SRKDFGLIVG
VDDKGDGYKV LKEGSDGPVV VSVGKKEMQE PFDSKFSALD LNNKQISIGD VVKIAKGPSE
GKQGAVRQVY RGIIFLYAEG EEENGGYLCC KSQSCEKVKL FTEESNDKTG GFDASAFGDS
TSSPKSPLSP EKEWQQQPKE KYINSNQGDK GSMYSIGQKL RIRVGPLKGY LCRVIGLRYS
DITVKLDSQH KIFTVKSEHL AEVRDRNTMP STSVDAGMGS FQQFDMLGQQ KATMETGQKE
QARLKITLQR GATQQLRTNL TLLVINQVVG MPGVNRLLLK LALLVFGEMH VLQKLKLLGE
NKELQLPMLK IQVLGVSMVE ALMVTNKTMT QYGVN
//
