ID A0A078JFX0_BRANA Unreviewed; 472 AA.
AC A0A078JFX0;
DT 29-OCT-2014, integrated into UniProtKB/TrEMBL.
DT 29-OCT-2014, sequence version 1.
DT 27-MAR-2024, entry version 37.
DE SubName: Full=BnaC08g49000D protein {ECO:0000313|EMBL:CDY65355.1};
GN Name=BnaC08g49000D {ECO:0000313|EMBL:CDY65355.1};
GN ORFNames=GSBRNA2T00045683001 {ECO:0000313|EMBL:CDY65355.1};
OS Brassica napus (Rape).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica.
OX NCBI_TaxID=3708 {ECO:0000313|EMBL:CDY65355.1, ECO:0000313|Proteomes:UP000028999};
RN [1] {ECO:0000313|EMBL:CDY65355.1, ECO:0000313|Proteomes:UP000028999}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Darmor-bzh {ECO:0000313|Proteomes:UP000028999};
RX PubMed=25146293; DOI=10.1126/science.1253435;
RA Chalhoub B., Denoeud F., Liu S., Parkin I.A., Tang H., Wang X., Chiquet J.,
RA Belcram H., Tong C., Samans B., Correa M., Da Silva C., Just J.,
RA Falentin C., Koh C.S., Le Clainche I., Bernard M., Bento P., Noel B.,
RA Labadie K., Alberti A., Charles M., Arnaud D., Guo H., Daviaud C.,
RA Alamery S., Jabbari K., Zhao M., Edger P.P., Chelaifa H., Tack D.,
RA Lassalle G., Mestiri I., Schnel N., Le Paslier M.C., Fan G., Renault V.,
RA Bayer P.E., Golicz A.A., Manoli S., Lee T.H., Thi V.H., Chalabi S., Hu Q.,
RA Fan C., Tollenaere R., Lu Y., Battail C., Shen J., Sidebottom C.H.,
RA Wang X., Canaguier A., Chauveau A., Berard A., Deniot G., Guan M., Liu Z.,
RA Sun F., Lim Y.P., Lyons E., Town C.D., Bancroft I., Wang X., Meng J.,
RA Ma J., Pires J.C., King G.J., Brunel D., Delourme R., Renard M., Aury J.M.,
RA Adams K.L., Batley J., Snowdon R.J., Tost J., Edwards D., Zhou Y., Hua W.,
RA Sharpe A.G., Paterson A.H., Guan C., Wincker P.;
RT "Plant genetics. Early allopolyploid evolution in the post-Neolithic
RT Brassica napus oilseed genome.";
RL Science 345:950-953(2014).
CC -!- SIMILARITY: Belongs to the glycosyl hydrolase 28 family.
CC {ECO:0000256|ARBA:ARBA00008834, ECO:0000256|RuleBase:RU361169}.
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DR EMBL; LK034754; CDY65355.1; -; Genomic_DNA.
DR RefSeq; XP_013712076.1; XM_013856622.1.
DR AlphaFoldDB; A0A078JFX0; -.
DR STRING; 3708.A0A078JFX0; -.
DR PaxDb; 3708-A0A078JFX0; -.
DR EnsemblPlants; CDY65355; CDY65355; GSBRNA2T00045683001.
DR GeneID; 106415822; -.
DR Gramene; CDY65355; CDY65355; GSBRNA2T00045683001.
DR KEGG; bna:106415822; -.
DR OMA; HMRVQVI; -.
DR OrthoDB; 5489079at2759; -.
DR Proteomes; UP000028999; Unassembled WGS sequence.
DR GO; GO:0004650; F:polygalacturonase activity; IEA:InterPro.
DR GO; GO:0005975; P:carbohydrate metabolic process; IEA:InterPro.
DR Gene3D; 2.160.20.10; Single-stranded right-handed beta-helix, Pectin lyase-like; 1.
DR InterPro; IPR000743; Glyco_hydro_28.
DR InterPro; IPR024535; Pectate_lyase_SF_prot.
DR InterPro; IPR012334; Pectin_lyas_fold.
DR InterPro; IPR011050; Pectin_lyase_fold/virulence.
DR PANTHER; PTHR31339:SF50; PECTIN LYASE-LIKE SUPERFAMILY PROTEIN; 1.
DR PANTHER; PTHR31339; PECTIN LYASE-RELATED; 1.
DR Pfam; PF00295; Glyco_hydro_28; 1.
DR Pfam; PF12708; Pectate_lyase_3; 1.
DR SUPFAM; SSF51126; Pectin lyase-like; 1.
PE 3: Inferred from homology;
KW Glycosidase {ECO:0000256|ARBA:ARBA00023295, ECO:0000256|RuleBase:RU361169};
KW Hydrolase {ECO:0000256|ARBA:ARBA00022801, ECO:0000256|RuleBase:RU361169};
KW Reference proteome {ECO:0000313|Proteomes:UP000028999};
KW Signal {ECO:0000256|SAM:SignalP}.
FT SIGNAL 1..23
FT /evidence="ECO:0000256|SAM:SignalP"
FT CHAIN 24..472
FT /evidence="ECO:0000256|SAM:SignalP"
FT /id="PRO_5001739485"
FT DOMAIN 46..128
FT /note="Pectate lyase superfamily protein"
FT /evidence="ECO:0000259|Pfam:PF12708"
SQ SEQUENCE 472 AA; 51371 MW; 40073A75264624D1 CRC64;
MKNILLCIVT IITLSFLTTN AQGRKVSQSY ETYEYTAITC RSHSASITDF GGVGDGKTLN
TKAFQSAVDH LSQYSSDGGA QLFVPAGKWL TGSFSLTSHF TLFLHKDATL LAAQDLEEYP
VLKALPSYGR GRDAAGGRFA SLVFGTNLSD VIITGNNGTI DGQGSFWWQK FHGGKLKYTR
PYLIELMFSD TIQISNITLI DSPSWNIHPV YSSNILVKGV TIIAPVKSPN TDGINPDSCT
NTRIEDCYII SGDDCVAVKS GWDEYGIAFG MPTKHLIIRR LTCVSPYSAA IALGSEMSGG
IEDVRAEDIT AYQTESGVRI KTAVGRGAFV RNVYVRGMSL HTMKWVFWMT GNYKAHADSH
YDPHALPEIT GINYRDIVAE NVSMAGRLEG ISGDPFTGIC ISNATISMAV KHKKAIWMCS
DVEGVTSGVD PKPCDLLDGK QSEKMDGGCE FPSDVLEIDN VELKSCSYQN VT
//
