ID A0A078JL29_BRANA Unreviewed; 342 AA.
AC A0A078JL29;
DT 29-OCT-2014, integrated into UniProtKB/TrEMBL.
DT 29-OCT-2014, sequence version 1.
DT 27-MAR-2024, entry version 33.
DE SubName: Full=(rape) hypothetical protein {ECO:0000313|EMBL:CAF1862472.1};
DE SubName: Full=BnaCnng51120D protein {ECO:0000313|EMBL:CDY66496.1};
GN Name=BnaCnng51120D {ECO:0000313|EMBL:CDY66496.1};
GN ORFNames=DARMORV10_C04P55830.1 {ECO:0000313|EMBL:CAF1862472.1},
GN GSBRNA2T00054441001 {ECO:0000313|EMBL:CDY66496.1};
OS Brassica napus (Rape).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica.
OX NCBI_TaxID=3708 {ECO:0000313|EMBL:CDY66496.1, ECO:0000313|Proteomes:UP000028999};
RN [1] {ECO:0000313|EMBL:CDY66496.1, ECO:0000313|Proteomes:UP000028999}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Darmor-bzh {ECO:0000313|Proteomes:UP000028999};
RX PubMed=25146293; DOI=10.1126/science.1253435;
RA Chalhoub B., Denoeud F., Liu S., Parkin I.A., Tang H., Wang X., Chiquet J.,
RA Belcram H., Tong C., Samans B., Correa M., Da Silva C., Just J.,
RA Falentin C., Koh C.S., Le Clainche I., Bernard M., Bento P., Noel B.,
RA Labadie K., Alberti A., Charles M., Arnaud D., Guo H., Daviaud C.,
RA Alamery S., Jabbari K., Zhao M., Edger P.P., Chelaifa H., Tack D.,
RA Lassalle G., Mestiri I., Schnel N., Le Paslier M.C., Fan G., Renault V.,
RA Bayer P.E., Golicz A.A., Manoli S., Lee T.H., Thi V.H., Chalabi S., Hu Q.,
RA Fan C., Tollenaere R., Lu Y., Battail C., Shen J., Sidebottom C.H.,
RA Wang X., Canaguier A., Chauveau A., Berard A., Deniot G., Guan M., Liu Z.,
RA Sun F., Lim Y.P., Lyons E., Town C.D., Bancroft I., Wang X., Meng J.,
RA Ma J., Pires J.C., King G.J., Brunel D., Delourme R., Renard M., Aury J.M.,
RA Adams K.L., Batley J., Snowdon R.J., Tost J., Edwards D., Zhou Y., Hua W.,
RA Sharpe A.G., Paterson A.H., Guan C., Wincker P.;
RT "Plant genetics. Early allopolyploid evolution in the post-Neolithic
RT Brassica napus oilseed genome.";
RL Science 345:950-953(2014).
RN [2] {ECO:0000313|EMBL:CDY66496.1}
RP NUCLEOTIDE SEQUENCE.
RA Genoscope - CEA;
RL Submitted (JUN-2014) to the EMBL/GenBank/DDBJ databases.
RN [3] {ECO:0000313|EMBL:CAF1862472.1}
RP NUCLEOTIDE SEQUENCE.
RG Genoscope - CEA;
RA William W.;
RL Submitted (JAN-2021) to the EMBL/GenBank/DDBJ databases.
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DR EMBL; HG994368; CAF1862472.1; -; Genomic_DNA.
DR EMBL; LK035292; CDY66496.1; -; Genomic_DNA.
DR RefSeq; XP_013697972.1; XM_013842518.1.
DR STRING; 3708.A0A078JL29; -.
DR PaxDb; 3708-A0A078JL29; -.
DR EnsemblPlants; CDY66496; CDY66496; GSBRNA2T00054441001.
DR GeneID; 106401906; -.
DR Gramene; CDY66496; CDY66496; GSBRNA2T00054441001.
DR KEGG; bna:106401906; -.
DR OMA; FVIGAVK; -.
DR OrthoDB; 5474641at2759; -.
DR Proteomes; UP000028999; Unassembled WGS sequence.
DR GO; GO:0008408; F:3'-5' exonuclease activity; IEA:InterPro.
DR GO; GO:0003723; F:RNA binding; IEA:UniProtKB-UniRule.
DR GO; GO:0006139; P:nucleobase-containing compound metabolic process; IEA:InterPro.
DR CDD; cd06148; Egl_like_exo; 1.
DR CDD; cd00105; KH-I; 1.
DR Gene3D; 3.30.1370.10; K Homology domain, type 1; 1.
DR Gene3D; 3.30.420.10; Ribonuclease H-like superfamily/Ribonuclease H; 1.
DR InterPro; IPR002562; 3'-5'_exonuclease_dom.
DR InterPro; IPR004087; KH_dom.
DR InterPro; IPR004088; KH_dom_type_1.
DR InterPro; IPR036612; KH_dom_type_1_sf.
DR InterPro; IPR012337; RNaseH-like_sf.
DR InterPro; IPR036397; RNaseH_sf.
DR PANTHER; PTHR46814:SF1; 3'-5' EXONUCLEASE DOMAIN-CONTAINING PROTEIN _ K HOMOLOGY DOMAIN-CONTAINING PROTEIN _ KH DOMAIN-CONTAINING PROTEIN; 1.
DR PANTHER; PTHR46814; EGALITARIAN, ISOFORM B; 1.
DR Pfam; PF01612; DNA_pol_A_exo1; 1.
DR Pfam; PF00013; KH_1; 1.
DR SMART; SM00474; 35EXOc; 1.
DR SMART; SM00322; KH; 1.
DR SUPFAM; SSF54791; Eukaryotic type KH-domain (KH-domain type I); 1.
DR SUPFAM; SSF53098; Ribonuclease H-like; 1.
DR PROSITE; PS50084; KH_TYPE_1; 1.
PE 4: Predicted;
KW Reference proteome {ECO:0000313|Proteomes:UP000028999};
KW RNA-binding {ECO:0000256|PROSITE-ProRule:PRU00117}.
FT DOMAIN 35..224
FT /note="3'-5' exonuclease"
FT /evidence="ECO:0000259|SMART:SM00474"
FT DOMAIN 272..340
FT /note="K Homology"
FT /evidence="ECO:0000259|SMART:SM00322"
FT REGION 1..32
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 342 AA; 38411 MW; E88C979CF9AF7841 CRC64;
MASSSPTQRT HVPIPPEPGG GRSLTQDANE PPVPIHIVTE PLQLPADFLN PSPEKKLVIG
FDCEGVDLCR HGKLCIMQIA FPNAIYLVDV IQGGEMLMKA CKPALESAYI TKVIHDCKRD
SEALYFQFGI RLHNVVDTQI AFSLIEEQEG RRRPLDDYIS FVSLLADPRY CGISYEEKEE
VRVLMRQDPK FWTYRPMTEL MIRAAADDVR FLLYLYHKMM GKLNQRSLWH LAVRGSLYCR
CLCCMNDTDF ANWPTVPPLP DNLKIGDQCP EEEILSVLDV PPGKMGRVIG RKGASILAIK
EACNAEILIG GAKGPPDKIF VIGPVKEVRK AEAILRGRMI DY
//
