GenomeNet

Database: UniProt
Entry: A0A078JVW3_BRANA
LinkDB: A0A078JVW3_BRANA
Original site: A0A078JVW3_BRANA 
ID   A0A078JVW3_BRANA        Unreviewed;       189 AA.
AC   A0A078JVW3;
DT   29-OCT-2014, integrated into UniProtKB/TrEMBL.
DT   29-OCT-2014, sequence version 1.
DT   24-JAN-2024, entry version 29.
DE   SubName: Full=(rape) hypothetical protein {ECO:0000313|EMBL:CAF2133332.1};
DE   SubName: Full=BnaAnng31200D protein {ECO:0000313|EMBL:CDY69687.1};
GN   Name=BnaAnng31200D {ECO:0000313|EMBL:CDY69687.1};
GN   ORFNames=DARMORV10_A03P64360.1 {ECO:0000313|EMBL:CAF2133332.1},
GN   GSBRNA2T00091493001 {ECO:0000313|EMBL:CDY69687.1};
OS   Brassica napus (Rape).
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC   rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica.
OX   NCBI_TaxID=3708 {ECO:0000313|EMBL:CDY69687.1, ECO:0000313|Proteomes:UP000028999};
RN   [1] {ECO:0000313|EMBL:CDY69687.1, ECO:0000313|Proteomes:UP000028999}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=cv. Darmor-bzh {ECO:0000313|Proteomes:UP000028999};
RX   PubMed=25146293; DOI=10.1126/science.1253435;
RA   Chalhoub B., Denoeud F., Liu S., Parkin I.A., Tang H., Wang X., Chiquet J.,
RA   Belcram H., Tong C., Samans B., Correa M., Da Silva C., Just J.,
RA   Falentin C., Koh C.S., Le Clainche I., Bernard M., Bento P., Noel B.,
RA   Labadie K., Alberti A., Charles M., Arnaud D., Guo H., Daviaud C.,
RA   Alamery S., Jabbari K., Zhao M., Edger P.P., Chelaifa H., Tack D.,
RA   Lassalle G., Mestiri I., Schnel N., Le Paslier M.C., Fan G., Renault V.,
RA   Bayer P.E., Golicz A.A., Manoli S., Lee T.H., Thi V.H., Chalabi S., Hu Q.,
RA   Fan C., Tollenaere R., Lu Y., Battail C., Shen J., Sidebottom C.H.,
RA   Wang X., Canaguier A., Chauveau A., Berard A., Deniot G., Guan M., Liu Z.,
RA   Sun F., Lim Y.P., Lyons E., Town C.D., Bancroft I., Wang X., Meng J.,
RA   Ma J., Pires J.C., King G.J., Brunel D., Delourme R., Renard M., Aury J.M.,
RA   Adams K.L., Batley J., Snowdon R.J., Tost J., Edwards D., Zhou Y., Hua W.,
RA   Sharpe A.G., Paterson A.H., Guan C., Wincker P.;
RT   "Plant genetics. Early allopolyploid evolution in the post-Neolithic
RT   Brassica napus oilseed genome.";
RL   Science 345:950-953(2014).
RN   [2] {ECO:0000313|EMBL:CDY69687.1}
RP   NUCLEOTIDE SEQUENCE.
RA   Genoscope - CEA;
RL   Submitted (JUN-2014) to the EMBL/GenBank/DDBJ databases.
RN   [3] {ECO:0000313|EMBL:CAF2133332.1}
RP   NUCLEOTIDE SEQUENCE.
RG   Genoscope - CEA;
RA   William W.;
RL   Submitted (JAN-2021) to the EMBL/GenBank/DDBJ databases.
CC   -!- SIMILARITY: Belongs to the type IV zinc-finger family. Class B
CC       subfamily. {ECO:0000256|ARBA:ARBA00024019}.
CC   ---------------------------------------------------------------------------
CC   Copyrighted by the UniProt Consortium, see https://www.uniprot.org/terms
CC   Distributed under the Creative Commons Attribution (CC BY 4.0) License
CC   ---------------------------------------------------------------------------
DR   EMBL; HG994357; CAF2133332.1; -; Genomic_DNA.
DR   EMBL; LK040054; CDY69687.1; -; Genomic_DNA.
DR   RefSeq; XP_013639947.1; XM_013784493.1.
DR   PaxDb; 3708-A0A078JVW3; -.
DR   EnsemblPlants; CDY69687; CDY69687; GSBRNA2T00091493001.
DR   GeneID; 106345268; -.
DR   Gramene; CDY69687; CDY69687; GSBRNA2T00091493001.
DR   KEGG; bna:106345268; -.
DR   OMA; PANNEYF; -.
DR   OrthoDB; 3616433at2759; -.
DR   Proteomes; UP000028999; Unassembled WGS sequence.
DR   GO; GO:0003700; F:DNA-binding transcription factor activity; IEA:InterPro.
DR   GO; GO:0043565; F:sequence-specific DNA binding; IEA:InterPro.
DR   GO; GO:0008270; F:zinc ion binding; IEA:InterPro.
DR   GO; GO:0009908; P:flower development; IEA:InterPro.
DR   CDD; cd00202; ZnF_GATA; 1.
DR   Gene3D; 3.30.50.10; Erythroid Transcription Factor GATA-1, subunit A; 1.
DR   InterPro; IPR044272; GATA18/19/20.
DR   InterPro; IPR000679; Znf_GATA.
DR   InterPro; IPR013088; Znf_NHR/GATA.
DR   PANTHER; PTHR46813; GATA TRANSCRIPTION FACTOR 18; 1.
DR   PANTHER; PTHR46813:SF19; GATA TRANSCRIPTION FACTOR 19; 1.
DR   Pfam; PF00320; GATA; 1.
DR   SMART; SM00401; ZnF_GATA; 1.
DR   SUPFAM; SSF57716; Glucocorticoid receptor-like (DNA-binding domain); 1.
DR   PROSITE; PS00344; GATA_ZN_FINGER_1; 1.
DR   PROSITE; PS50114; GATA_ZN_FINGER_2; 1.
PE   3: Inferred from homology;
KW   DNA-binding {ECO:0000256|ARBA:ARBA00023125};
KW   Metal-binding {ECO:0000256|ARBA:ARBA00022723};
KW   Reference proteome {ECO:0000313|Proteomes:UP000028999};
KW   Transcription {ECO:0000256|ARBA:ARBA00023163};
KW   Transcription regulation {ECO:0000256|ARBA:ARBA00023015};
KW   Zinc {ECO:0000256|PROSITE-ProRule:PRU00094};
KW   Zinc-finger {ECO:0000256|PROSITE-ProRule:PRU00094}.
FT   DOMAIN          76..112
FT                   /note="GATA-type"
FT                   /evidence="ECO:0000259|PROSITE:PS50114"
FT   REGION          118..137
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ   SEQUENCE   189 AA;  20787 MW;  9238D53DD9FB7BB4 CRC64;
     MMGFSMFFSE NDVVHHSSAY ASVDCTLSLG TPSTRLCNDD DDRRFSSHTS NNISNALGSW
     DFLHGGKKGG GGGGNNLLAR RCANCDTTST PLWRNGPRGP KSLCNACGIR FKKEERRAST
     ARNSTSGGVS TAAAGVPASD HHGVTNYYYN NNNNNNNHYD SSSPWIHHQH QNTQRVPYYS
     PANNEYFFR
//
DBGET integrated database retrieval system