ID A0A084A4B6_9GAMM Unreviewed; 714 AA.
AC A0A084A4B6;
DT 29-OCT-2014, integrated into UniProtKB/TrEMBL.
DT 29-OCT-2014, sequence version 1.
DT 27-MAR-2024, entry version 28.
DE SubName: Full=Lysine decarboxylase, constitutive {ECO:0000313|EMBL:KEY60145.1};
DE EC=4.1.1.18 {ECO:0000313|EMBL:KEY60145.1};
GN Name=ldcC {ECO:0000313|EMBL:KEY60145.1};
GN ORFNames=SRDD_08950 {ECO:0000313|EMBL:KEY60145.1};
OS Serratia sp. DD3.
OC Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
OC Yersiniaceae; Serratia.
OX NCBI_TaxID=1410619 {ECO:0000313|EMBL:KEY60145.1, ECO:0000313|Proteomes:UP000017810};
RN [1] {ECO:0000313|EMBL:KEY60145.1, ECO:0000313|Proteomes:UP000017810}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=DD3 {ECO:0000313|EMBL:KEY60145.1,
RC ECO:0000313|Proteomes:UP000017810};
RX PubMed=25212623;
RA Poehlein A., Freese H.M., Daniel R., Simeonova D.D.;
RT "Draft Genome Sequence of Serratia sp. Strain DD3, Isolated from the Guts
RT of Daphnia magna.";
RL Genome Announc. 2:e00903-14(2014).
CC -!- COFACTOR:
CC Name=pyridoxal 5'-phosphate; Xref=ChEBI:CHEBI:597326;
CC Evidence={ECO:0000256|ARBA:ARBA00001933};
CC -!- SIMILARITY: Belongs to the Orn/Lys/Arg decarboxylase class-I family.
CC {ECO:0000256|ARBA:ARBA00010671}.
CC -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC whole genome shotgun (WGS) entry which is preliminary data.
CC {ECO:0000313|EMBL:KEY60145.1}.
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DR EMBL; AYKS02000031; KEY60145.1; -; Genomic_DNA.
DR RefSeq; WP_023489820.1; NZ_AYKS02000031.1.
DR AlphaFoldDB; A0A084A4B6; -.
DR STRING; 1410619.SRDD_08950; -.
DR eggNOG; COG1982; Bacteria.
DR OrthoDB; 9761189at2; -.
DR Proteomes; UP000017810; Unassembled WGS sequence.
DR GO; GO:0005737; C:cytoplasm; IEA:InterPro.
DR GO; GO:0008923; F:lysine decarboxylase activity; IEA:UniProtKB-EC.
DR GO; GO:0006520; P:amino acid metabolic process; IEA:InterPro.
DR CDD; cd00615; Orn_deC_like; 1.
DR Gene3D; 3.40.50.2300; -; 1.
DR Gene3D; 3.90.1150.10; Aspartate Aminotransferase, domain 1; 1.
DR Gene3D; 3.90.100.10; Orn/Lys/Arg decarboxylase, C-terminal domain; 1.
DR Gene3D; 3.40.640.10; Type I PLP-dependent aspartate aminotransferase-like (Major domain); 1.
DR InterPro; IPR005308; OKR_de-COase_N.
DR InterPro; IPR011193; Orn/lys/arg_de-COase.
DR InterPro; IPR000310; Orn/Lys/Arg_deCO2ase_major_dom.
DR InterPro; IPR008286; Prn/Lys/Arg_de-COase_C.
DR InterPro; IPR036633; Prn/Lys/Arg_de-COase_C_sf.
DR InterPro; IPR015424; PyrdxlP-dep_Trfase.
DR InterPro; IPR015421; PyrdxlP-dep_Trfase_major.
DR InterPro; IPR015422; PyrdxlP-dep_Trfase_small.
DR PANTHER; PTHR45229:SF3; BIODEGRADATIVE ARGININE DECARBOXYLASE; 1.
DR PANTHER; PTHR45229; CONSTITUTIVE ORNITHINE DECARBOXYLASE; 1.
DR Pfam; PF01276; OKR_DC_1; 1.
DR Pfam; PF03711; OKR_DC_1_C; 1.
DR Pfam; PF03709; OKR_DC_1_N; 1.
DR PIRSF; PIRSF009393; Orn_decarb; 1.
DR SUPFAM; SSF55904; Ornithine decarboxylase C-terminal domain; 1.
DR SUPFAM; SSF53383; PLP-dependent transferases; 1.
DR PROSITE; PS00703; OKR_DC_1; 1.
PE 3: Inferred from homology;
KW Lyase {ECO:0000313|EMBL:KEY60145.1};
KW Pyridoxal phosphate {ECO:0000256|ARBA:ARBA00022898,
KW ECO:0000256|PIRSR:PIRSR009393-1};
KW Reference proteome {ECO:0000313|Proteomes:UP000017810}.
FT DOMAIN 362..376
FT /note="Orn/Lys/Arg decarboxylases family 1 pyridoxal-P
FT attachment site"
FT /evidence="ECO:0000259|PROSITE:PS00703"
FT MOD_RES 367
FT /note="N6-(pyridoxal phosphate)lysine"
FT /evidence="ECO:0000256|PIRSR:PIRSR009393-1"
SQ SEQUENCE 714 AA; 80530 MW; 4D8CC217471B09A3 CRC64;
MNIIAIMSPM GVYYKDEPIR ELHTALAAMG FQLVYPKNSG DLLKLIEDNA RICGVIFDWD
DYSLELCSEI NDLNEYLPLY AFINTHSTFD VTLHEMRMVL YFFEYGLSTA DDIAQRIRQY
TDEYIDTITP PLTKALFTYV KEGKYTFCTP GHMGGTAFQK SPVGSLFYDF FGANTLKADI
SVSVTELGSL LDHSGPHLEA EEYIARTFNA EQSYLVTNGT STANKIVGMY AIPAGRTVLI
DRNCHKSLCH LLMMCDIVPI YLRPLRNAYG ILGGIPQREF THDSIAKRVA ETTNASWPVH
AVITNSTYDG LLYNTDYIKQ TLDVASIHFD SAWVPYTNFH PIYAGKSGMS GERIPGKVIY
ETQSTHKLLA AFSQASMIHI KGDYDEGTFN EAYMMHTTTS PHYGIVASME TAAAMLRGNP
GRRIINRSVE RALHFRREIQ RLRDESDSWF FDIWQPGKID EAECWPLDPD DNWHGFGHTD
ADHMYLDPIK VTILTPGMNE LGELEDSGIP AALVAKYLDQ RGIVVEKTGP YNLLFLFSIG
IDKTKAMSLL RSLTDFKRGY DLNLLIKNML PDLYAEDPDF YRNMRIQDLA AGIHQLICKH
NLPHLMLCAF DVLPEMKLTP YQMFQQQVSG NVETCEIDHL IGRVAANMIL PYPPGVPLVM
PGEMITEESR GVLDFLLMLC SIGEHYPGFE TDIHGAKLTE DGRYLVNVLK TTAV
//