ID A0A087FY99_ARAAL Unreviewed; 1105 AA.
AC A0A087FY99;
DT 29-OCT-2014, integrated into UniProtKB/TrEMBL.
DT 29-OCT-2014, sequence version 1.
DT 27-MAR-2024, entry version 35.
DE RecName: Full=Reverse transcriptase {ECO:0008006|Google:ProtNLM};
GN ORFNames=AALP_AAs54367U000800 {ECO:0000313|EMBL:KFK22601.1};
OS Arabis alpina (Alpine rock-cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis.
OX NCBI_TaxID=50452 {ECO:0000313|EMBL:KFK22601.1, ECO:0000313|Proteomes:UP000029120};
RN [1] {ECO:0000313|Proteomes:UP000029120}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Pajares {ECO:0000313|Proteomes:UP000029120};
RX PubMed=27246759; DOI=10.1038/nplants.2014.23;
RA Willing E.M., Rawat V., Mandakova T., Maumus F., James G.V.,
RA Nordstroem K.J., Becker C., Warthmann N., Chica C., Szarzynska B.,
RA Zytnicki M., Albani M.C., Kiefer C., Bergonzi S., Castaings L.,
RA Mateos J.L., Berns M.C., Bujdoso N., Piofczyk T., de Lorenzo L.,
RA Barrero-Sicilia C., Mateos I., Piednoel M., Hagmann J., Chen-Min-Tao R.,
RA Iglesias-Fernandez R., Schuster S.C., Alonso-Blanco C., Roudier F.,
RA Carbonero P., Paz-Ares J., Davis S.J., Pecinka A., Quesneville H.,
RA Colot V., Lysak M.A., Weigel D., Coupland G., Schneeberger K.;
RT "Genome expansion of Arabis alpina linked with retrotransposition and
RT reduced symmetric DNA methylation.";
RL Nat. Plants 1:14023-14023(2015).
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DR EMBL; KL987555; KFK22601.1; -; Genomic_DNA.
DR AlphaFoldDB; A0A087FY99; -.
DR EnsemblPlants; KFK22601; KFK22601; AALP_AAs54367U000800.
DR Gramene; KFK22601; KFK22601; AALP_AAs54367U000800.
DR eggNOG; KOG0017; Eukaryota.
DR OMA; QTWISER; -.
DR OrthoDB; 904595at2759; -.
DR Proteomes; UP000029120; Unassembled WGS sequence.
DR CDD; cd00303; retropepsin_like; 1.
DR CDD; cd09274; RNase_HI_RT_Ty3; 1.
DR CDD; cd01647; RT_LTR; 1.
DR Gene3D; 1.10.340.70; -; 1.
DR Gene3D; 2.40.50.40; -; 1.
DR Gene3D; 3.10.20.370; -; 1.
DR Gene3D; 3.30.70.270; -; 2.
DR Gene3D; 2.40.70.10; Acid Proteases; 1.
DR Gene3D; 3.10.10.10; HIV Type 1 Reverse Transcriptase, subunit A, domain 1; 1.
DR InterPro; IPR016197; Chromo-like_dom_sf.
DR InterPro; IPR000953; Chromo/chromo_shadow_dom.
DR InterPro; IPR023780; Chromo_domain.
DR InterPro; IPR043502; DNA/RNA_pol_sf.
DR InterPro; IPR041588; Integrase_H2C2.
DR InterPro; IPR021109; Peptidase_aspartic_dom_sf.
DR InterPro; IPR043128; Rev_trsase/Diguanyl_cyclase.
DR InterPro; IPR000477; RT_dom.
DR InterPro; IPR041577; RT_RNaseH_2.
DR PANTHER; PTHR35046:SF9; CCHC-TYPE DOMAIN-CONTAINING PROTEIN; 1.
DR PANTHER; PTHR35046; ZINC KNUCKLE (CCHC-TYPE) FAMILY PROTEIN; 1.
DR Pfam; PF00385; Chromo; 1.
DR Pfam; PF17921; Integrase_H2C2; 1.
DR Pfam; PF17919; RT_RNaseH_2; 1.
DR Pfam; PF08284; RVP_2; 1.
DR Pfam; PF00078; RVT_1; 1.
DR SMART; SM00298; CHROMO; 1.
DR SUPFAM; SSF50630; Acid proteases; 1.
DR SUPFAM; SSF54160; Chromo domain-like; 1.
DR SUPFAM; SSF56672; DNA/RNA polymerases; 1.
DR PROSITE; PS50013; CHROMO_2; 1.
DR PROSITE; PS50878; RT_POL; 1.
PE 4: Predicted;
KW Reference proteome {ECO:0000313|Proteomes:UP000029120}.
FT DOMAIN 454..633
FT /note="Reverse transcriptase"
FT /evidence="ECO:0000259|PROSITE:PS50878"
FT DOMAIN 1031..1065
FT /note="Chromo"
FT /evidence="ECO:0000259|PROSITE:PS50013"
SQ SEQUENCE 1105 AA; 123936 MW; 725610DB44174AC4 CRC64;
MKEVKKQLQR LDALERIEQM LGSTVAPSPN ALTSVAAQAG MPSNDTVIPH REGKGVLGET
PPLFGNASRE LGYSPAPQPP WTLPEDRRVS PIGRLELPVF NGEQAEDWIA RVEQFFELGE
MTDGQKLQEC FDNKNPNQSG PVKPPFRRLT VAEVEWRKAN GLCLRCDEKG HSRSQCTQKE
FSVLIVQDAG SETEWVEKEE ENEEVNRGVT EVAKLSLNSM VGISSPRTVK LRGTIRGESV
MVMIDSGASH NFISEQVVTR LGLTATDTTS YGVLSGGGIT VQGRGVCKDV ELCLQDLVIV
APFLPLELGS ADAILGIQWL ASLGDMKCNW KLQKLSFMVG EEEVELRGDP SLCCSPISMK
GLWKALDREG QGVIIEFGGL QTEGQRRERA VPGVLQGVIS EFASVFEEPQ GLPPCRGKKH
AIVLETGASP VSVRPFHYPQ VQREELQKQV ATMLAAGIIK ESTSPFSSPV LLVKKKDGSW
RFCVDYMALN KVTVGDSYPI PMIDQLLDEL HGAIVFSKLD VRERYHQIRV KAEDVPKTAF
RTHDGHYEFL VMPFGLTNAP ATFQSLMNDV FRQFLRRFVL VFFDDILIYK VEYLGHVISW
RGVAADPTKV KAMVNWPPPK NVKALRGFLG LTGYYRKFVK GYGGIARPLT ALLKKDQFKW
SPTAEAAFQT LKAAMSTVPV LALVDFSKQF VVESDASGIG LGVVLMQQQQ PIAYFSQALT
DKHKLKSVYE RELMVVVFAI QKWRHYLLGR RFVVKTDQRS LKFLLEQREI NLEYQRWLSK
ILGFDFEIQY KPGLENKAAY ALSRVETHQL LALSMPVAIQ MSEFESEVDQ DEDLSKLKKA
VLANLGDHPN YSIVQGRLLR KGRLVIPHTS KMISLILKEF HDGKMGGHGG VVKTQKGINA
VFFWKGMMTE IRSYVAACQQ QLLKTQQIMK QQADNHRREV EFAVGDMVFL KIRPYRQKTL
ARRANEKLAA RYYGPYEVEA KVGPVAYKLR LPPTVKIHHT FHVSQLKAAV GSALVHVTIP
PNLNEEGILE AEPEFVLGDR VNRETGQEEV LIQWKGLSEE DCTWEWKSVI KAQFPHFNLE
DKVNQKGAGN VRVSTSVVPV PQEKW
//
