ID   A0A087H9Q7_ARAAL        Unreviewed;       689 AA.
AC   A0A087H9Q7;
DT   29-OCT-2014, integrated into UniProtKB/TrEMBL.
DT   29-OCT-2014, sequence version 1.
DT   27-MAR-2024, entry version 35.
DE   RecName: Full=DYW domain-containing protein {ECO:0000259|Pfam:PF14432};
GN   OrderedLocusNames=AALP_Aa3g169800 {ECO:0000313|EMBL:KFK38859.1};
OS   Arabis alpina (Alpine rock-cress).
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC   rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis.
OX   NCBI_TaxID=50452 {ECO:0000313|EMBL:KFK38859.1, ECO:0000313|Proteomes:UP000029120};
RN   [1] {ECO:0000313|Proteomes:UP000029120}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=cv. Pajares {ECO:0000313|Proteomes:UP000029120};
RX   PubMed=27246759; DOI=10.1038/nplants.2014.23;
RA   Willing E.M., Rawat V., Mandakova T., Maumus F., James G.V.,
RA   Nordstroem K.J., Becker C., Warthmann N., Chica C., Szarzynska B.,
RA   Zytnicki M., Albani M.C., Kiefer C., Bergonzi S., Castaings L.,
RA   Mateos J.L., Berns M.C., Bujdoso N., Piofczyk T., de Lorenzo L.,
RA   Barrero-Sicilia C., Mateos I., Piednoel M., Hagmann J., Chen-Min-Tao R.,
RA   Iglesias-Fernandez R., Schuster S.C., Alonso-Blanco C., Roudier F.,
RA   Carbonero P., Paz-Ares J., Davis S.J., Pecinka A., Quesneville H.,
RA   Colot V., Lysak M.A., Weigel D., Coupland G., Schneeberger K.;
RT   "Genome expansion of Arabis alpina linked with retrotransposition and
RT   reduced symmetric DNA methylation.";
RL   Nat. Plants 1:14023-14023(2015).
CC   -!- SIMILARITY: Belongs to the PPR family. PCMP-H subfamily.
CC       {ECO:0000256|ARBA:ARBA00006643}.
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DR   EMBL; CM002871; KFK38859.1; -; Genomic_DNA.
DR   AlphaFoldDB; A0A087H9Q7; -.
DR   EnsemblPlants; KFK38859; KFK38859; AALP_AA3G169800.
DR   Gramene; KFK38859; KFK38859; AALP_AA3G169800.
DR   eggNOG; KOG4197; Eukaryota.
DR   OMA; VNYVMMS; -.
DR   OrthoDB; 353911at2759; -.
DR   Proteomes; UP000029120; Chromosome 3.
DR   GO; GO:0003723; F:RNA binding; IEA:InterPro.
DR   GO; GO:0008270; F:zinc ion binding; IEA:InterPro.
DR   GO; GO:0009451; P:RNA modification; IEA:InterPro.
DR   Gene3D; 1.25.40.10; Tetratricopeptide repeat domain; 5.
DR   InterPro; IPR032867; DYW_dom.
DR   InterPro; IPR046848; E_motif.
DR   InterPro; IPR002885; Pentatricopeptide_rpt.
DR   InterPro; IPR045215; PPR_prot_At1g15510.
DR   InterPro; IPR011990; TPR-like_helical_dom_sf.
DR   NCBIfam; TIGR00756; PPR; 5.
DR   PANTHER; PTHR24015:SF1903; DYW_DEAMINASE DOMAIN-CONTAINING PROTEIN; 1.
DR   PANTHER; PTHR24015; OS07G0578800 PROTEIN-RELATED; 1.
DR   Pfam; PF14432; DYW_deaminase; 1.
DR   Pfam; PF20431; E_motif; 1.
DR   Pfam; PF01535; PPR; 4.
DR   Pfam; PF13041; PPR_2; 3.
DR   PROSITE; PS51375; PPR; 5.
PE   3: Inferred from homology;
KW   Reference proteome {ECO:0000313|Proteomes:UP000029120};
KW   Repeat {ECO:0000256|ARBA:ARBA00022737}.
FT   REPEAT          71..105
FT                   /note="PPR"
FT                   /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT   REPEAT          172..206
FT                   /note="PPR"
FT                   /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT   REPEAT          347..377
FT                   /note="PPR"
FT                   /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT   REPEAT          378..412
FT                   /note="PPR"
FT                   /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT   REPEAT          413..448
FT                   /note="PPR"
FT                   /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT   DOMAIN          594..689
FT                   /note="DYW"
FT                   /evidence="ECO:0000259|Pfam:PF14432"
SQ   SEQUENCE   689 AA;  77418 MW;  AC0984EB7A122194 CRC64;
     MILKQRQDLV RILRVCTKNG LSNQGGQVHC VLLKSRSGLD LFTSNYLIDM YCKCREPFVA
     HKVFDSMPKR NVVSWTALMS GHVFNGDPKG SLYLFSEMGR QGVYPNEFTL STNLRACGLL
     NALEKGLQIH GFSLKISLEM MVEVGNSLVD MYSKCGRINE AEKVFRWMVV KSLISWNAMI
     SGYVHAGYGN RALATFRMMQ FRKMRVRPDE FTLTSLLKAC SSIGVINGGK EIHGFLVRSG
     FHCSSSTTIT GSLVDLYVKC GNLVGARKAF DQMKEKAMLS WSSLILGYAQ EGDFVEAMGL
     FRRLQVLNSQ IENFVLSSLI GVFADFALLR QGMQMQALAV KLPSGLEISV LNSVVDMYLK
     CGLVDEAEKC FAKMQSRDVI SWTIMITGYG KHGLGQKAVS VFNEMLRHNI EPDDVCYLAV
     LSACSHSGLV EEGKELFSKL LETQGIKPRV EHYACIVDLL GRAGRLKEAK RLIDKMPVKA
     NVGIWQTLLS SCQLHGDIKL GEKVGKILLN LDGKNSANYV MMSNLYGQAG YWHQHGKARE
     HGKMKGLKKE AGMSWVEIER EVHFFRSGED SHPLTLTIRE TLKEVERRMR EELGYVYDLK
     QELRDIDDES KEENLRAHSE KLAIGLALAS GGLNQKGKTI RVFKNLRVCI DCHEFIKGLS
     KIMKITFVVR DAVRFHSFEE GSCSCGDYW
//