ID A0A087HCQ9_ARAAL Unreviewed; 1023 AA.
AC A0A087HCQ9;
DT 29-OCT-2014, integrated into UniProtKB/TrEMBL.
DT 29-OCT-2014, sequence version 1.
DT 27-MAR-2024, entry version 39.
DE RecName: Full=SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 2 {ECO:0008006|Google:ProtNLM};
GN OrderedLocusNames=AALP_Aa3g305100 {ECO:0000313|EMBL:KFK39911.1};
OS Arabis alpina (Alpine rock-cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis.
OX NCBI_TaxID=50452 {ECO:0000313|EMBL:KFK39911.1, ECO:0000313|Proteomes:UP000029120};
RN [1] {ECO:0000313|Proteomes:UP000029120}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Pajares {ECO:0000313|Proteomes:UP000029120};
RX PubMed=27246759; DOI=10.1038/nplants.2014.23;
RA Willing E.M., Rawat V., Mandakova T., Maumus F., James G.V.,
RA Nordstroem K.J., Becker C., Warthmann N., Chica C., Szarzynska B.,
RA Zytnicki M., Albani M.C., Kiefer C., Bergonzi S., Castaings L.,
RA Mateos J.L., Berns M.C., Bujdoso N., Piofczyk T., de Lorenzo L.,
RA Barrero-Sicilia C., Mateos I., Piednoel M., Hagmann J., Chen-Min-Tao R.,
RA Iglesias-Fernandez R., Schuster S.C., Alonso-Blanco C., Roudier F.,
RA Carbonero P., Paz-Ares J., Davis S.J., Pecinka A., Quesneville H.,
RA Colot V., Lysak M.A., Weigel D., Coupland G., Schneeberger K.;
RT "Genome expansion of Arabis alpina linked with retrotransposition and
RT reduced symmetric DNA methylation.";
RL Nat. Plants 1:14023-14023(2015).
CC -!- SIMILARITY: Belongs to the SNF2/RAD54 helicase family. RAD16 subfamily.
CC {ECO:0000256|ARBA:ARBA00008438}.
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DR EMBL; CM002871; KFK39911.1; -; Genomic_DNA.
DR AlphaFoldDB; A0A087HCQ9; -.
DR EnsemblPlants; KFK39911; KFK39911; AALP_AA3G305100.
DR Gramene; KFK39911; KFK39911; AALP_AA3G305100.
DR eggNOG; KOG1001; Eukaryota.
DR OMA; KVEPWSN; -.
DR OrthoDB; 11932at2759; -.
DR Proteomes; UP000029120; Chromosome 3.
DR GO; GO:0005524; F:ATP binding; IEA:InterPro.
DR GO; GO:0140658; F:ATP-dependent chromatin remodeler activity; IEA:InterPro.
DR GO; GO:0016818; F:hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides; IEA:InterPro.
DR GO; GO:0003676; F:nucleic acid binding; IEA:InterPro.
DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro.
DR CDD; cd18008; DEXDc_SHPRH-like; 1.
DR CDD; cd18793; SF2_C_SNF; 1.
DR Gene3D; 3.40.50.300; P-loop containing nucleotide triphosphate hydrolases; 1.
DR Gene3D; 3.40.50.10810; Tandem AAA-ATPase domain; 1.
DR Gene3D; 3.30.40.10; Zinc/RING finger domain, C3HC4 (zinc finger); 1.
DR InterPro; IPR014001; Helicase_ATP-bd.
DR InterPro; IPR001650; Helicase_C.
DR InterPro; IPR014905; HIRAN.
DR InterPro; IPR027417; P-loop_NTPase.
DR InterPro; IPR038718; SNF2-like_sf.
DR InterPro; IPR049730; SNF2/RAD54-like_C.
DR InterPro; IPR000330; SNF2_N.
DR InterPro; IPR001841; Znf_RING.
DR InterPro; IPR013083; Znf_RING/FYVE/PHD.
DR InterPro; IPR017907; Znf_RING_CS.
DR PANTHER; PTHR45626:SF45; DNA REPAIR PROTEIN RAD5A; 1.
DR PANTHER; PTHR45626; TRANSCRIPTION TERMINATION FACTOR 2-RELATED; 1.
DR Pfam; PF00271; Helicase_C; 1.
DR Pfam; PF08797; HIRAN; 1.
DR Pfam; PF00176; SNF2-rel_dom; 1.
DR Pfam; PF13920; zf-C3HC4_3; 1.
DR SMART; SM00487; DEXDc; 1.
DR SMART; SM00490; HELICc; 1.
DR SMART; SM00910; HIRAN; 1.
DR SMART; SM00184; RING; 1.
DR SUPFAM; SSF52540; P-loop containing nucleoside triphosphate hydrolases; 2.
DR SUPFAM; SSF57850; RING/U-box; 1.
DR PROSITE; PS51192; HELICASE_ATP_BIND_1; 1.
DR PROSITE; PS51194; HELICASE_CTER; 1.
DR PROSITE; PS00518; ZF_RING_1; 1.
DR PROSITE; PS50089; ZF_RING_2; 1.
PE 3: Inferred from homology;
KW ATP-binding {ECO:0000256|ARBA:ARBA00022840};
KW Hydrolase {ECO:0000256|ARBA:ARBA00022801};
KW Metal-binding {ECO:0000256|ARBA:ARBA00022723};
KW Nucleotide-binding {ECO:0000256|ARBA:ARBA00022741};
KW Reference proteome {ECO:0000313|Proteomes:UP000029120};
KW Zinc {ECO:0000256|ARBA:ARBA00022833};
KW Zinc-finger {ECO:0000256|ARBA:ARBA00022771, ECO:0000256|PROSITE-
KW ProRule:PRU00175}.
FT DOMAIN 400..616
FT /note="Helicase ATP-binding"
FT /evidence="ECO:0000259|PROSITE:PS51192"
FT DOMAIN 788..828
FT /note="RING-type"
FT /evidence="ECO:0000259|PROSITE:PS50089"
FT DOMAIN 858..1023
FT /note="Helicase C-terminal"
FT /evidence="ECO:0000259|PROSITE:PS51194"
FT REGION 77..98
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 1023 AA; 113680 MW; ADE36E65432587F2 CRC64;
MGTKVSDDLV TTVRSVVGSD YSDMDIIRAL HMANLDPTAA INIIFDTPSF GKVDVATTPS
PTGKRFENGI KGCRFGEGGS VGVDEEDESV GNGGGEEESV SGNEWWFVGC SELSGLSTCK
GRKLKCGDEL LFTFPHSKKS SCESTSGKRF GRGRPALRSG SDIVRFSTKD SGEIGRIPNE
WARCLLPLVR DKKIRMEGRC KSAPEALSIM DTIVLSVSVY INSSMFQKHS ATSLKAASNT
AEESVFHPLP NLFRLLGMVP FKKAEFTPED LSTRKRPLSS KDGSGIPTSL LQLNKVKNLN
QETDGDENEQ CISDGDLDNI VGAGDSSGLK EMETPHTLLC ELRPYQKQAL HWMTQLEKGN
CTDEAATMLH PCWEAYCLTD KRELVVYLNS FTGDATIHFP STLQMARGGI LADAMGLGKT
VMTISLLLAH SWKAASTGFL CPSDEGDKAI RSSTDELTSP SVKATKFLGF DKKLPEQKSA
LENGGNLIVC PMTLLGQWKS EIETHAKPGS LSVYVHYGQS RPKDAKLLSQ SDVVITTYGV
LTSEFSAENS ADSDGLYAVR WFRIVLDEAH IIKNSKSQIS LAAAALVADR RWCLTGTPIQ
NNLEDLYSLL RFLRIEPWGT WAWWNKLVQK PFEEGDERGL KLVQSILRPI MLRRTKSSTD
REGRPILVLP PADTRVIYCE LSESERDFYD ALFKRSKVKF DQFVEQGKVL HNYASILELL
LRLRQCCDHP FLVMSRGDTA EYSDLNKLSK RFLGGKSSDL EREGKDVPSV AFVQEVVEEL
RKGEQGECPI CLEAFEDAVL TPCAHRLCRE CLLASWRNSA SGLCPVCRKT VSKQELITAP
TESRFQVDVE KNWVESSKIT ALLQELESLR SSGSKSILFS QWTAFLDLLQ IPLSRNNISF
VRLDGTLNQH QREKVLKEFS EDGSIMVMLM SLKAGGVGIN LTAASNAFVM DPWWNPAVEE
QAVMRIHRIG QTKKVNIRRF IIKGTVEERM EAVQARKQRM ISGALTDQEV RSARIEELKM
LFT
//
