ID A0A089ZPT9_9PSED Unreviewed; 502 AA.
AC A0A089ZPT9;
DT 26-NOV-2014, integrated into UniProtKB/TrEMBL.
DT 26-NOV-2014, sequence version 1.
DT 27-MAR-2024, entry version 50.
DE RecName: Full=HTH-type transcriptional regulatory protein TyrR {ECO:0000256|ARBA:ARBA00029500};
GN ORFNames=LT40_03215 {ECO:0000313|EMBL:AIS16461.1};
OS Pseudomonas rhizosphaerae.
OC Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales;
OC Pseudomonadaceae; Pseudomonas.
OX NCBI_TaxID=216142 {ECO:0000313|EMBL:AIS16461.1, ECO:0000313|Proteomes:UP000029499};
RN [1] {ECO:0000313|EMBL:AIS16461.1, ECO:0000313|Proteomes:UP000029499}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=DSM 16299 {ECO:0000313|EMBL:AIS16461.1};
RX PubMed=25483321; DOI=10.1016/j.jbiotec.2014.11.031;
RA Kwak Y., Jung B.K., Shin J.H.;
RT "Complete genome sequence of Pseudomonas rhizosphaerae IH5T (=DSM 16299T),
RT a phosphate-solubilizing rhizobacterium for bacterial biofertilizer.";
RL J. Biotechnol. 193:137-138(2015).
CC -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000256|ARBA:ARBA00004496}.
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DR EMBL; CP009533; AIS16461.1; -; Genomic_DNA.
DR RefSeq; WP_043186394.1; NZ_CP009533.1.
DR AlphaFoldDB; A0A089ZPT9; -.
DR STRING; 216142.LT40_03215; -.
DR KEGG; prh:LT40_03215; -.
DR eggNOG; COG3283; Bacteria.
DR HOGENOM; CLU_000445_8_2_6; -.
DR OrthoDB; 9804019at2; -.
DR Proteomes; UP000029499; Chromosome.
DR GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-KW.
DR GO; GO:0016887; F:ATP hydrolysis activity; IEA:InterPro.
DR GO; GO:0003677; F:DNA binding; IEA:InterPro.
DR GO; GO:0019439; P:aromatic compound catabolic process; IEA:UniProtKB-KW.
DR GO; GO:0006355; P:regulation of DNA-templated transcription; IEA:InterPro.
DR CDD; cd00009; AAA; 1.
DR CDD; cd00130; PAS; 1.
DR Gene3D; 1.10.8.60; -; 1.
DR Gene3D; 3.30.70.260; -; 1.
DR Gene3D; 1.10.10.60; Homeodomain-like; 1.
DR Gene3D; 3.40.50.300; P-loop containing nucleotide triphosphate hydrolases; 1.
DR Gene3D; 3.30.450.20; PAS domain; 1.
DR InterPro; IPR003593; AAA+_ATPase.
DR InterPro; IPR002912; ACT_dom.
DR InterPro; IPR009057; Homeobox-like_sf.
DR InterPro; IPR030828; HTH_TypR.
DR InterPro; IPR027417; P-loop_NTPase.
DR InterPro; IPR000014; PAS.
DR InterPro; IPR035965; PAS-like_dom_sf.
DR InterPro; IPR002078; Sigma_54_int.
DR InterPro; IPR025662; Sigma_54_int_dom_ATP-bd_1.
DR InterPro; IPR025944; Sigma_54_int_dom_CS.
DR NCBIfam; TIGR04381; HTH_TypR; 1.
DR PANTHER; PTHR32071:SF3; HTH-TYPE TRANSCRIPTIONAL REGULATORY PROTEIN TYRR; 1.
DR PANTHER; PTHR32071; TRANSCRIPTIONAL REGULATORY PROTEIN; 1.
DR Pfam; PF18024; HTH_50; 1.
DR Pfam; PF13188; PAS_8; 1.
DR Pfam; PF00158; Sigma54_activat; 1.
DR SMART; SM00382; AAA; 1.
DR SMART; SM00091; PAS; 1.
DR SUPFAM; SSF46689; Homeodomain-like; 1.
DR SUPFAM; SSF52540; P-loop containing nucleoside triphosphate hydrolases; 1.
DR SUPFAM; SSF55785; PYP-like sensor domain (PAS domain); 1.
DR PROSITE; PS51671; ACT; 1.
DR PROSITE; PS50112; PAS; 1.
DR PROSITE; PS00675; SIGMA54_INTERACT_1; 1.
DR PROSITE; PS00688; SIGMA54_INTERACT_3; 1.
DR PROSITE; PS50045; SIGMA54_INTERACT_4; 1.
PE 4: Predicted;
KW Aromatic hydrocarbons catabolism {ECO:0000256|ARBA:ARBA00022797};
KW ATP-binding {ECO:0000256|ARBA:ARBA00022840};
KW Nucleotide-binding {ECO:0000256|ARBA:ARBA00022741};
KW Reference proteome {ECO:0000313|Proteomes:UP000029499};
KW Transcription {ECO:0000256|ARBA:ARBA00023163};
KW Transcription regulation {ECO:0000256|ARBA:ARBA00023015}.
FT DOMAIN 2..74
FT /note="ACT"
FT /evidence="ECO:0000259|PROSITE:PS51671"
FT DOMAIN 77..116
FT /note="PAS"
FT /evidence="ECO:0000259|PROSITE:PS50112"
FT DOMAIN 193..423
FT /note="Sigma-54 factor interaction"
FT /evidence="ECO:0000259|PROSITE:PS50045"
SQ SEQUENCE 502 AA; 54653 MW; EF7A74A286AD575F CRC64;
MRIHVSFIDR VGITQEVLAL LGARNLNLDA VEMVPPNVYI DAPTLSPLVL EELHDALFRV
RGVEDVRVVD ILPGQRRHLQ LEALLAAMAD PVLALDSAGN VLLANPALVE LYGREPAGQS
VADLFADPAL LGALLEQGFR LPLREVNLNG QTLLLDATPI TDAGALLTLY PPNRMGERLA
ALHHDHAEGF DSLLGDSAPI RALKARAQRV AALDAPLLIQ GETGTGKELV ARACHAVSAR
HGAPFLALNC AALPENLAES ELFGYAPGAF TGAQRGGKPG LMELAHQGTV FLDEIGEMSP
YLQAKLLRFL NDGSFRRVGG DREVKVNVRI LSATHRNLEQ MVAEGAFRED LFYRLNVLNL
NVPPLRERGE DILLLARYFM QQACTQIQRP MCRLTANTYP ALLGNRWPGN VRQLQNVIFR
AAAVCESNTV DIADLDIAGT RVPHRNDGEV VSLEQAVGAY EKALLEKLYP SYPSSRQLAS
RLQTSHTAIA NRLRKYGIGS AS
//
