ID A0A090LFW7_STRRB Unreviewed; 1418 AA.
AC A0A090LFW7;
DT 26-NOV-2014, integrated into UniProtKB/TrEMBL.
DT 26-NOV-2014, sequence version 1.
DT 24-JAN-2024, entry version 47.
DE SubName: Full=Protein RRP5 homolog {ECO:0000313|EMBL:CEF68652.1};
GN ORFNames=SRAE_2000330700 {ECO:0000313|EMBL:CEF68652.1,
GN ECO:0000313|WBParaSite:SRAE_2000330700.1,
GN ECO:0000313|WormBase:SRAE_2000330700};
OS Strongyloides ratti (Parasitic roundworm).
OC Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida;
OC Tylenchina; Panagrolaimomorpha; Strongyloidoidea; Strongyloididae;
OC Strongyloides.
OX NCBI_TaxID=34506 {ECO:0000313|EMBL:CEF68652.1};
RN [1] {ECO:0000313|EMBL:CEF68652.1, ECO:0000313|Proteomes:UP000035682}
RP NUCLEOTIDE SEQUENCE.
RC STRAIN=ED321 {ECO:0000313|Proteomes:UP000035682,
RC ECO:0000313|WBParaSite:SRAE_2000330700.1}, and ED321 Heterogonic
RC {ECO:0000313|EMBL:CEF68652.1};
RA Martin A.A.;
RL Submitted (SEP-2014) to the EMBL/GenBank/DDBJ databases.
RN [2] {ECO:0000313|WBParaSite:SRAE_2000330700.1}
RP IDENTIFICATION.
RG WormBaseParasite;
RL Submitted (DEC-2020) to UniProtKB.
CC -!- SUBCELLULAR LOCATION: Nucleus, nucleolus
CC {ECO:0000256|ARBA:ARBA00004604}.
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DR EMBL; LN609529; CEF68652.1; -; Genomic_DNA.
DR STRING; 34506.A0A090LFW7; -.
DR EnsemblMetazoa; SRAE_2000330700.1; SRAE_2000330700.1; WBGene00263529.
DR WBParaSite; SRAE_2000330700.1; SRAE_2000330700.1; WBGene00263529.
DR WormBase; SRAE_2000330700; SRP06655; WBGene00263529; -.
DR eggNOG; KOG1070; Eukaryota.
DR eggNOG; KOG1240; Eukaryota.
DR eggNOG; KOG1890; Eukaryota.
DR OMA; VILWIDY; -.
DR OrthoDB; 167902at2759; -.
DR Proteomes; UP000035682; Chromosome X.
DR GO; GO:0005730; C:nucleolus; IEA:UniProtKB-SubCell.
DR GO; GO:0003676; F:nucleic acid binding; IEA:InterPro.
DR GO; GO:0006364; P:rRNA processing; IEA:UniProtKB-KW.
DR Gene3D; 2.40.50.140; Nucleic acid-binding proteins; 3.
DR Gene3D; 1.25.40.10; Tetratricopeptide repeat domain; 2.
DR InterPro; IPR003107; HAT.
DR InterPro; IPR012340; NA-bd_OB-fold.
DR InterPro; IPR045209; Rrp5.
DR InterPro; IPR003029; S1_domain.
DR InterPro; IPR008847; Suf.
DR InterPro; IPR011990; TPR-like_helical_dom_sf.
DR PANTHER; PTHR23270; PROGRAMMED CELL DEATH PROTEIN 11 PRE-RRNA PROCESSING PROTEIN RRP5; 1.
DR PANTHER; PTHR23270:SF10; PROTEIN RRP5 HOMOLOG; 1.
DR Pfam; PF05843; Suf; 1.
DR SMART; SM00386; HAT; 6.
DR SMART; SM00316; S1; 7.
DR SUPFAM; SSF50249; Nucleic acid-binding proteins; 4.
DR SUPFAM; SSF48452; TPR-like; 2.
DR PROSITE; PS50126; S1; 3.
PE 4: Predicted;
KW Reference proteome {ECO:0000313|Proteomes:UP000035682};
KW rRNA processing {ECO:0000256|ARBA:ARBA00022552}.
FT DOMAIN 175..241
FT /note="S1 motif"
FT /evidence="ECO:0000259|PROSITE:PS50126"
FT DOMAIN 437..506
FT /note="S1 motif"
FT /evidence="ECO:0000259|PROSITE:PS50126"
FT DOMAIN 747..816
FT /note="S1 motif"
FT /evidence="ECO:0000259|PROSITE:PS50126"
FT REGION 1..44
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 592..612
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 1030..1111
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 597..612
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 1053..1073
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 1074..1105
FT /note="Acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 1418 AA; 162031 MW; 3DF1664839393F43 CRC64;
MFGEEPSFPR SKGDTTDSNN TNRPQKRKFP RKSEVKNKSN QKVDKFLDDE QKKKNLYIKE
KEEHSLVWKK QFCLSYATPG VLCLAVVKEI RELYVLLETS NSVKLKLPAN MISYQFAKAS
TNEEISLSSI VTKGQMLVVK VVKGIEEGAK TNEITVTCIP KQVNSHVVSG NINIGTVLVG
VLDKLEDKGA IIDLGLSSGS KGFVPYNSLP SFVDSSKLHL GQPFLFSVTQ CSSRIIQLTG
YIEGNVPSPE VAMHFDKDKL FPGMVIMCSP DDFTNTGVYT NFGNNVKGFI DKYAMPPRFR
EDLSTFKKPI KGVITISKPS SPMLIINCNP DIVAISKPEK RLVFDGYKIG DTIECVVKDI
LNVGYSLDLP VKEDGKPCLT NAFLKENYGG NCEKLKVGDK ILVRVINYKI FDKCLVVTNK
PEVMKQKIMS LENVVPGKLI VATVRGVTDS CVRLKISDTV RGTIPKIHAT DRQVKNWQQK
FVVGNMLRVR PLFIDEDSDN VICTAKPTLL QSTYPPVTSV DKKYCDMITH GYIIKQLPNG
YLISFYNRVI AFMPNKYAET LTQTSIGSPV KVRIMNVDVE KKKVIVCPSH INPVDHTKEN
SNNEKKEKQT KKSSNYKIKI YTTYEAVVKG PWNHEAGNPS CSIELILPEG NIGRLHASEL
DLSNYKLYDN PVSMFLQENT GKSIRVKVIE MKNLMLSTNS ENTKKKDNPV KHVEKFKIAE
CTLKKHKIEL GRKSGKLLNY AKKFKVGSIV RCFVTKVTNP KSLYVEINPY VKGFIAREVL
KDISKDDGKE YEEGMFIEGK ITSISKARTY PTLQLANLED LTIGINQEVT GKILSVKTCP
LRILVSLPGQ QLGVLRLFGI STDFKEALEL FKEFEVNDCF TFKVISYNKT KESWNLISKL
VSDTIANNPS LAEKIYFSRR KIPFETEMIG HVISIKDNSC LVDISPSVTG SMTITENDKI
HINDIIKCAT VKGKKDEMLK LKYVSTIFDG SLIKIDNSEI EDKSKFEDVN SGHNSTNDTV
MDEDIPVTVV TSDSELRNPD ENIFNDSSDG ESETEESDKK LKNKKREKEK FDNNNEEEIE
EEEDEDDEEA EENDEGEEED DEEEEEVVVR KKPKIDLAKE IKNLSETEKE KIIFERQEQI
NENNMEINNE DDFERLLTGS PNESMLWINY IGFYLANENI EKAREIAERA LKTINYMMED
ELYNIWVAYL NMESKLGDEN RIKKIYERAA NNVNEYKISM QYIKILRNAT LYDLLEHHIE
KFLKKYGHTE PEIWYIYAEH LYFVEKAELA RELQKRACFS LPKKMHVDVL CKFAQLEYKL
CDQEQGKTMF EKIVQVYKQR TDVWNVYLDL VIKNESPKTT RDLFEEIIKI PFGPKKLKPF
FKKWIKYEEK HGDYKSQKYV HEKAQEIVND SMVNLGLI
//
