ID A0A090VBK1_9FLAO Unreviewed; 708 AA.
AC A0A090VBK1; A0A4R8MAC7;
DT 26-NOV-2014, integrated into UniProtKB/TrEMBL.
DT 26-NOV-2014, sequence version 1.
DT 24-JAN-2024, entry version 33.
DE SubName: Full=Transcription accessory protein {ECO:0000313|EMBL:GAL60759.1};
GN ORFNames=DFQ06_2046 {ECO:0000313|EMBL:TDY62224.1}, JCM19300_3697
GN {ECO:0000313|EMBL:GAL60759.1};
OS Algibacter lectus.
OC Bacteria; Bacteroidota; Flavobacteriia; Flavobacteriales;
OC Flavobacteriaceae; Algibacter.
OX NCBI_TaxID=221126 {ECO:0000313|EMBL:GAL60759.1, ECO:0000313|Proteomes:UP000029644};
RN [1] {ECO:0000313|EMBL:GAL60759.1, ECO:0000313|Proteomes:UP000029644}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=JCM 19300 {ECO:0000313|EMBL:GAL60759.1,
RC ECO:0000313|Proteomes:UP000029644};
RA Takatani N., Nakanishi M., Meirelles P., Mino S., Suda W., Oshima K.,
RA Hattori M., Ohkuma M., Hosokawa M., Miyashita K., Thompson F.L., Niwa A.,
RA Sawabe T., Sawabe T.;
RT "Draft Genome Sequences of Marine Flavobacterium Algibacter lectus Strains
RT SS8 and NR4.";
RL Genome Announc. 2:e01168-14(2014).
RN [2] {ECO:0000313|EMBL:TDY62224.1, ECO:0000313|Proteomes:UP000294824}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=CECT 8301 {ECO:0000313|EMBL:TDY62224.1,
RC ECO:0000313|Proteomes:UP000294824};
RA Whitman W.;
RT "Genomic Encyclopedia of Type Strains, Phase III (KMG-III): the genomes of
RT soil and plant-associated and newly described type strains.";
RL Submitted (MAR-2019) to the EMBL/GenBank/DDBJ databases.
CC -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC whole genome shotgun (WGS) entry which is preliminary data.
CC {ECO:0000313|EMBL:GAL60759.1}.
CC ---------------------------------------------------------------------------
CC Copyrighted by the UniProt Consortium, see https://www.uniprot.org/terms
CC Distributed under the Creative Commons Attribution (CC BY 4.0) License
CC ---------------------------------------------------------------------------
DR EMBL; BBNQ01000001; GAL60759.1; -; Genomic_DNA.
DR EMBL; SORL01000008; TDY62224.1; -; Genomic_DNA.
DR RefSeq; WP_042502438.1; NZ_WUDS01000002.1.
DR AlphaFoldDB; A0A090VBK1; -.
DR OrthoDB; 9804714at2; -.
DR Proteomes; UP000029644; Unassembled WGS sequence.
DR Proteomes; UP000294824; Unassembled WGS sequence.
DR GO; GO:0003676; F:nucleic acid binding; IEA:InterPro.
DR GO; GO:0006139; P:nucleobase-containing compound metabolic process; IEA:InterPro.
DR CDD; cd05685; S1_Tex; 1.
DR Gene3D; 2.40.50.140; Nucleic acid-binding proteins; 1.
DR Gene3D; 1.10.10.650; RuvA domain 2-like; 1.
DR Gene3D; 1.10.3500.10; Tex N-terminal region-like; 1.
DR Gene3D; 1.10.150.310; Tex RuvX-like domain-like; 1.
DR Gene3D; 3.30.420.140; YqgF/RNase H-like domain; 1.
DR InterPro; IPR041692; HHH_9.
DR InterPro; IPR012340; NA-bd_OB-fold.
DR InterPro; IPR012337; RNaseH-like_sf.
DR InterPro; IPR010994; RuvA_2-like.
DR InterPro; IPR003029; S1_domain.
DR InterPro; IPR044146; S1_Tex.
DR InterPro; IPR023323; Tex-like_dom_sf.
DR InterPro; IPR023319; Tex-like_HTH_dom_sf.
DR InterPro; IPR018974; Tex-like_N.
DR InterPro; IPR032639; Tex_YqgF.
DR InterPro; IPR006641; YqgF/RNaseH-like_dom.
DR InterPro; IPR037027; YqgF/RNaseH-like_dom_sf.
DR PANTHER; PTHR10724; 30S RIBOSOMAL PROTEIN S1; 1.
DR PANTHER; PTHR10724:SF10; S1 RNA-BINDING DOMAIN-CONTAINING PROTEIN 1; 1.
DR Pfam; PF12836; HHH_3; 1.
DR Pfam; PF17674; HHH_9; 1.
DR Pfam; PF00575; S1; 1.
DR Pfam; PF09371; Tex_N; 1.
DR Pfam; PF16921; Tex_YqgF; 1.
DR SMART; SM00316; S1; 1.
DR SMART; SM00732; YqgFc; 1.
DR SUPFAM; SSF50249; Nucleic acid-binding proteins; 1.
DR SUPFAM; SSF53098; Ribonuclease H-like; 1.
DR SUPFAM; SSF47781; RuvA domain 2-like; 2.
DR SUPFAM; SSF158832; Tex N-terminal region-like; 1.
DR PROSITE; PS50126; S1; 1.
PE 4: Predicted;
KW Coiled coil {ECO:0000256|SAM:Coils};
KW Reference proteome {ECO:0000313|Proteomes:UP000029644}.
FT DOMAIN 638..707
FT /note="S1 motif"
FT /evidence="ECO:0000259|PROSITE:PS50126"
FT COILED 54..95
FT /evidence="ECO:0000256|SAM:Coils"
SQ SEQUENCE 708 AA; 79331 MW; C4E6EA20250C1E52 CRC64;
MKLLVSYIIS NTNLPEQSVK NTVDLLNEDC TIPFISRYRK ERTGNLDEVQ IGDIVKFKEQ
FEALEKRKKA ILKALEEQEV LTTELKQKIE STQDLTTLED LYLPYKKSRK TKAEKARLNG
LEPLAKIIMS QNANDVESIA FKYVKGEVAS VEDALEGARH IIAEWINERA DIRNNIRRQL
ERFAIISTKA VKTKAKDEDA QKFRDYFDWE ESLSRIPSHR LLAILRAEKE GFIRVKVEID
HDRAFDNIER RIIKSNNACA EEIQLAIKDA YKRLLLPSLS NEAMQIAKDK ADEAAITVFA
KNLKQLLLGS PLGEKRVLAI DPGFRSGCKL VCLDAQGQLK YNETIYPHPP KSDSIGAMKK
ISSLCDAYKI EAIAIGNGTA SRETEALVRK VHFKNDMQVF VVSEAGASIY SASKIAREEF
PDYDVTVRGS VSIGRRLQDP LAELVKIDAK SIGVGQYQHD VDQSKLQKQL DVVVENCVNS
VGVNINSASK SLLSYVSGIG PKLAENIFNY RNENGVFKSR AAIKKVPRLG GKAFEQGAAF
LRIKDAENPL DDSAVHPESY AVVAKIAKDL KTSIKDLIGN KALLQTINLK NYCTETVGLL
TLEDIVKELE KPGLDIREQA KVFAFNQNIK TINDLHEGQL LPGIVNNITN FGCFVDVGIK
ESGLIHVSNL SDSFVKDVNE HVSLHQQIIV KVLEVDVPRK RIQLKLHK
//
