ID A0A091UL65_NIPNI Unreviewed; 1375 AA.
AC A0A091UL65;
DT 26-NOV-2014, integrated into UniProtKB/TrEMBL.
DT 26-NOV-2014, sequence version 1.
DT 27-MAR-2024, entry version 29.
DE RecName: Full=DNA-directed RNA polymerase subunit {ECO:0000256|RuleBase:RU004279};
DE EC=2.7.7.6 {ECO:0000256|RuleBase:RU004279};
DE Flags: Fragment;
GN ORFNames=Y956_09321 {ECO:0000313|EMBL:KFQ91411.1};
OS Nipponia nippon (Crested ibis) (Ibis nippon).
OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
OC Coelurosauria; Aves; Neognathae; Pelecaniformes; Threskiornithidae;
OC Nipponia.
OX NCBI_TaxID=128390 {ECO:0000313|EMBL:KFQ91411.1, ECO:0000313|Proteomes:UP000053283};
RN [1] {ECO:0000313|EMBL:KFQ91411.1, ECO:0000313|Proteomes:UP000053283}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=BGI_Y956 {ECO:0000313|EMBL:KFQ91411.1};
RA Zhang G., Li C.;
RT "Genome evolution of avian class.";
RL Submitted (APR-2014) to the EMBL/GenBank/DDBJ databases.
CC -!- FUNCTION: DNA-dependent RNA polymerase catalyzes the transcription of
CC DNA into RNA using the four ribonucleoside triphosphates as substrates.
CC {ECO:0000256|RuleBase:RU004279}.
CC -!- CATALYTIC ACTIVITY:
CC Reaction=a ribonucleoside 5'-triphosphate + RNA(n) = diphosphate +
CC RNA(n+1); Xref=Rhea:RHEA:21248, Rhea:RHEA-COMP:14527, Rhea:RHEA-
CC COMP:17342, ChEBI:CHEBI:33019, ChEBI:CHEBI:61557, ChEBI:CHEBI:140395;
CC EC=2.7.7.6; Evidence={ECO:0000256|RuleBase:RU004279};
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|ARBA:ARBA00004123}.
CC -!- SIMILARITY: Belongs to the RNA polymerase beta' chain family.
CC {ECO:0000256|ARBA:ARBA00006460, ECO:0000256|RuleBase:RU004279}.
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DR EMBL; KL409716; KFQ91411.1; -; Genomic_DNA.
DR STRING; 128390.A0A091UL65; -.
DR eggNOG; KOG0261; Eukaryota.
DR Proteomes; UP000053283; Unassembled WGS sequence.
DR GO; GO:0000428; C:DNA-directed RNA polymerase complex; IEA:UniProtKB-KW.
DR GO; GO:0031981; C:nuclear lumen; IEA:UniProt.
DR GO; GO:0003677; F:DNA binding; IEA:InterPro.
DR GO; GO:0003899; F:DNA-directed 5'-3' RNA polymerase activity; IEA:UniProtKB-EC.
DR GO; GO:0006351; P:DNA-templated transcription; IEA:InterPro.
DR CDD; cd02736; RNAP_III_Rpc1_C; 1.
DR CDD; cd02583; RNAP_III_RPC1_N; 1.
DR Gene3D; 1.10.132.30; -; 1.
DR Gene3D; 1.10.150.390; -; 1.
DR Gene3D; 2.40.40.20; -; 1.
DR Gene3D; 6.10.250.2940; -; 1.
DR Gene3D; 6.20.50.80; -; 1.
DR Gene3D; 3.30.1490.180; RNA polymerase ii; 1.
DR Gene3D; 4.10.860.120; RNA polymerase II, clamp domain; 1.
DR Gene3D; 1.10.274.100; RNA polymerase Rpb1, domain 3; 1.
DR InterPro; IPR045867; DNA-dir_RpoC_beta_prime.
DR InterPro; IPR000722; RNA_pol_asu.
DR InterPro; IPR006592; RNA_pol_N.
DR InterPro; IPR007080; RNA_pol_Rpb1_1.
DR InterPro; IPR007066; RNA_pol_Rpb1_3.
DR InterPro; IPR042102; RNA_pol_Rpb1_3_sf.
DR InterPro; IPR007083; RNA_pol_Rpb1_4.
DR InterPro; IPR007081; RNA_pol_Rpb1_5.
DR InterPro; IPR044893; RNA_pol_Rpb1_clamp_domain.
DR InterPro; IPR035698; RNAP_III_Rpc1_C.
DR InterPro; IPR035697; RNAP_III_RPC1_N.
DR InterPro; IPR038120; Rpb1_funnel_sf.
DR PANTHER; PTHR19376; DNA-DIRECTED RNA POLYMERASE; 1.
DR PANTHER; PTHR19376:SF32; DNA-DIRECTED RNA POLYMERASE III SUBUNIT RPC1; 1.
DR Pfam; PF04997; RNA_pol_Rpb1_1; 1.
DR Pfam; PF00623; RNA_pol_Rpb1_2; 1.
DR Pfam; PF04983; RNA_pol_Rpb1_3; 1.
DR Pfam; PF05000; RNA_pol_Rpb1_4; 1.
DR Pfam; PF04998; RNA_pol_Rpb1_5; 1.
DR SMART; SM00663; RPOLA_N; 1.
DR SUPFAM; SSF64484; beta and beta-prime subunits of DNA dependent RNA-polymerase; 1.
PE 3: Inferred from homology;
KW DNA-directed RNA polymerase {ECO:0000256|ARBA:ARBA00022478,
KW ECO:0000256|RuleBase:RU004279};
KW Nucleotidyltransferase {ECO:0000256|ARBA:ARBA00022695,
KW ECO:0000256|RuleBase:RU004279}; Nucleus {ECO:0000256|ARBA:ARBA00023242};
KW Reference proteome {ECO:0000313|Proteomes:UP000053283};
KW Transcription {ECO:0000256|ARBA:ARBA00023163,
KW ECO:0000256|RuleBase:RU004279};
KW Transferase {ECO:0000256|ARBA:ARBA00022679, ECO:0000256|RuleBase:RU004279}.
FT DOMAIN 233..538
FT /note="RNA polymerase N-terminal"
FT /evidence="ECO:0000259|SMART:SM00663"
FT NON_TER 1
FT /evidence="ECO:0000313|EMBL:KFQ91411.1"
FT NON_TER 1375
FT /evidence="ECO:0000313|EMBL:KFQ91411.1"
SQ SEQUENCE 1375 AA; 153917 MW; F66C5B7699BA0C86 CRC64;
SHICFGMKSP EEMRQQAHIQ VVSKNLYSQD NHHSPLQYGV LDHRMGTSEK DRPCETCGKN
LADCLGHYGY IDLELPCFHV GYFKAVIGIL QMICKTCCRI MLSVEEKKQF LDYLKRPGLT
YLQKRGLKKK VSEKCRKKNT CPYCGAFNGT VKKCGLLKII HEKYKTNKKV VDPIVSTFLQ
SFETAIEHNK EVEPLLGRAQ ENLNPLVVLN LFKRIPAEDI PLLLMNPEAG KPSDLILTRL
LVPPLCIRPS VVSDLKSGTN EDDLTMKLTE IIFLNDVIKK HRISGAKTQM IMEDWDFLQL
QCALYINSEL SGIPLNMAPK KWTRGFVQRL KGKQGRFRGN LSGKRVDFSG RTVISPDPNL
RIDEVAVPIH VAKILTFPEK VNKANINFMR KLVRNGPDVH PGANFIQQRH TQMKRFLKYG
NREKMAQELK FGDIVERHLI DGDIVLFNRQ PSLHKLSIMA HIARVKPHRT FRFNECVCTP
YNADFDGDEM NLHLPQTEEA KAEALVLMGT KANLVTPRNG EPLIAAIQDF LTGAYLLTLK
DTFFDRAKAC QIIASILVGK DEKIKVRLPP PAILKPVTLW TGKQVFSLIL KPSDDCPVKA
NLRTKGKQYC GKGEDLCYND SYVTIQNSEL MSGSMDKGTL GSGSKNNIFY ILLRDWGQVE
AADAMSRLAR LAPVYLSNRG FSIGIGDVTP GQGLLKAKYE LLNAGYKKCD EYIEALNTGK
LQQQPGCTAE ETLEALILKE LSVIRDHAGS ACLRELDKSN SPLIMALCGS KGSFINISQM
IACVGQQAIS GSRVPDGFEN RSLPHFEKHS KLPAAKGFVA NSFYSGLTPT EFFFHTMAGR
EGLVDTAVKT AETGYMQRRL VKSLEDLCSQ YDLTVRSSTG DIIQFIYGGD GLDPAAMEGK
DEPLEFKRVL DNIRAVYPCR SEPALSKNEL VLTAESIMKK NEFLCCRDSF LQEIKKFIKG
VSEKIKKTRD KYGINDNGTT EPRVLYQLDR ITPTQLEKFL ETCRDKYMRA QMEPGSAVGA
LCAQSIGEPG TQMTLKTFHF AGVASMNITL GVPRIKEIIN ASKAISTPII TAQLDKDDDP
DFARLVKGRI EKTLLGEISE YIEEVFLPDD CFILVKLSLE RIRLLRLEVN AETVRYSICI
SKLRVKPGDV AVHGEAVVCV TPRENSKSSM YYVLQSLKEE LPKVVVQGIP EVSRAVIHID
EQSGKEKYKL LVEGDNLRAV MATHGVKGTK TSSNNTYEVE KTLGIEAART TIINEIQYTM
VNHGMSIDRR HVMLLSDLMT YKGEVLGITR FGLAKMKESV LMLASFEKTA DHLFDAAYFG
QKDSVCGVSE CIIMGIPMNI GTGLFKLLHK ADKESTPPRR PLIFDNNEFH IPIVT
//