ID A0A095Y9E2_9BACT Unreviewed; 563 AA.
AC A0A095Y9E2;
DT 26-NOV-2014, integrated into UniProtKB/TrEMBL.
DT 26-NOV-2014, sequence version 1.
DT 27-MAR-2024, entry version 41.
DE RecName: Full=RNA polymerase {ECO:0008006|Google:ProtNLM};
GN ORFNames=HMPREF1640_00940 {ECO:0000313|EMBL:KGF19060.1};
OS Prevotella sp. S7-1-8.
OC Bacteria; Bacteroidota; Bacteroidia; Bacteroidales; Prevotellaceae;
OC Prevotella.
OX NCBI_TaxID=1284775 {ECO:0000313|EMBL:KGF19060.1, ECO:0000313|Proteomes:UP000029597};
RN [1] {ECO:0000313|EMBL:KGF19060.1, ECO:0000313|Proteomes:UP000029597}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=S7-1-8 {ECO:0000313|EMBL:KGF19060.1,
RC ECO:0000313|Proteomes:UP000029597};
RA McCorrison J., Sanka R., Torralba M., Gillis M., Haft D.H., Methe B.,
RA Sutton G., Nelson K.E.;
RL Submitted (JUL-2014) to the EMBL/GenBank/DDBJ databases.
CC -!- SIMILARITY: Belongs to the sigma-70 factor family. ECF subfamily.
CC {ECO:0000256|ARBA:ARBA00010641}.
CC -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC whole genome shotgun (WGS) entry which is preliminary data.
CC {ECO:0000313|EMBL:KGF19060.1}.
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DR EMBL; JRNC01000007; KGF19060.1; -; Genomic_DNA.
DR RefSeq; WP_036891552.1; NZ_JRNC01000007.1.
DR AlphaFoldDB; A0A095Y9E2; -.
DR eggNOG; COG1595; Bacteria.
DR OrthoDB; 1056775at2; -.
DR Proteomes; UP000029597; Unassembled WGS sequence.
DR GO; GO:0016020; C:membrane; IEA:UniProtKB-KW.
DR GO; GO:0003677; F:DNA binding; IEA:InterPro.
DR GO; GO:0016987; F:sigma factor activity; IEA:InterPro.
DR GO; GO:0006352; P:DNA-templated transcription initiation; IEA:InterPro.
DR CDD; cd06171; Sigma70_r4; 1.
DR Gene3D; 1.10.1740.10; -; 1.
DR Gene3D; 2.40.160.20; -; 1.
DR Gene3D; 1.10.10.10; Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain; 1.
DR InterPro; IPR011250; OMP/PagP_b-brl.
DR InterPro; IPR027385; OMP_b-brl.
DR InterPro; IPR039425; RNA_pol_sigma-70-like.
DR InterPro; IPR014284; RNA_pol_sigma-70_dom.
DR InterPro; IPR007627; RNA_pol_sigma70_r2.
DR InterPro; IPR013249; RNA_pol_sigma70_r4_t2.
DR InterPro; IPR013325; RNA_pol_sigma_r2.
DR InterPro; IPR013324; RNA_pol_sigma_r3/r4-like.
DR InterPro; IPR036388; WH-like_DNA-bd_sf.
DR NCBIfam; TIGR02937; sigma70-ECF; 1.
DR PANTHER; PTHR43133:SF46; ECF RNA POLYMERASE SIGMA FACTOR SIGG; 1.
DR PANTHER; PTHR43133; RNA POLYMERASE ECF-TYPE SIGMA FACTO; 1.
DR Pfam; PF13505; OMP_b-brl; 1.
DR Pfam; PF04542; Sigma70_r2; 1.
DR Pfam; PF08281; Sigma70_r4_2; 1.
DR SUPFAM; SSF56925; OMPA-like; 1.
DR SUPFAM; SSF88946; Sigma2 domain of RNA polymerase sigma factors; 1.
DR SUPFAM; SSF88659; Sigma3 and sigma4 domains of RNA polymerase sigma factors; 1.
PE 3: Inferred from homology;
KW Membrane {ECO:0000256|SAM:Phobius};
KW Reference proteome {ECO:0000313|Proteomes:UP000029597};
KW Transmembrane {ECO:0000256|SAM:Phobius};
KW Transmembrane helix {ECO:0000256|SAM:Phobius}.
FT TRANSMEM 181..198
FT /note="Helical"
FT /evidence="ECO:0000256|SAM:Phobius"
FT DOMAIN 23..91
FT /note="RNA polymerase sigma-70 region 2"
FT /evidence="ECO:0000259|Pfam:PF04542"
FT DOMAIN 121..173
FT /note="RNA polymerase sigma factor 70 region 4 type 2"
FT /evidence="ECO:0000259|Pfam:PF08281"
FT DOMAIN 405..544
FT /note="Outer membrane protein beta-barrel"
FT /evidence="ECO:0000259|Pfam:PF13505"
SQ SEQUENCE 563 AA; 63439 MW; 0C90AE6BEB6F2FB3 CRC64;
MASNITTLVE KAKQGDADAF SALYQMYYPK MKGICINILG EDKAVVDDLV QDAFILAFVS
LKDLKNTHRF SQWLTSITTN LVLKYQEKGK RYDFISLSDI EDEFSSVLED GNTSKQSIPY
EEITSAIDSL PKGYKKIFKM SVLEGLSHQE ISKLLDIAPH SSSSQLARAK ALLRKILSSR
AMLLIALALI VIPIYRYFTA KKKLVSENDV RIVRTRKPNK DITPIQKRPN VSVSSAQKAV
LNYSHQSVQQ GKNIVITVGD SIKTGQNVIL EISDSLQENQ HVLADNKRDS IITKDSVYTP
IPNEERWIAD DTRPHKKSKW QLLAAGSLGS TLAQNVCKII TSSTDDIMSD QPSEKSFTTW
EEYAKYLHRL TPTDPTAENV AMMDIADNNN GKIEEAEHHD KPIILGLAVN MSIGKHWSLE
TGLQYSYLKS YFTLGTGNYR VDKEQKLHYI GIPIKLSYQF MTYNRLSAYG SAGASIQIPL
HGKTYADYVV GGKSGYTTDW KTIPSIQWTV NTNIGIQYQF APKLTLFVEP TLNWYIPNGS
EFKNTWTERP FTLTVPFGIR LSW
//
