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Database: UniProt
Entry: A0A097AVF5_9VIBR
LinkDB: A0A097AVF5_9VIBR
Original site: A0A097AVF5_9VIBR 
ID   A0A097AVF5_9VIBR        Unreviewed;       157 AA.
AC   A0A097AVF5;
DT   07-JAN-2015, integrated into UniProtKB/TrEMBL.
DT   07-JAN-2015, sequence version 1.
DT   24-JAN-2024, entry version 58.
DE   RecName: Full=Transcription elongation factor GreA {ECO:0000256|ARBA:ARBA00013729, ECO:0000256|HAMAP-Rule:MF_00105};
DE   AltName: Full=Transcript cleavage factor GreA {ECO:0000256|HAMAP-Rule:MF_00105};
GN   Name=greA {ECO:0000256|HAMAP-Rule:MF_00105,
GN   ECO:0000313|EMBL:KPH27873.1};
GN   ORFNames=ADU60_06420 {ECO:0000313|EMBL:KPH27873.1}, F0224_11965
GN   {ECO:0000313|EMBL:NOI76400.1}, F0267_05250
GN   {ECO:0000313|EMBL:NOH37637.1}, TW71_19340
GN   {ECO:0000313|EMBL:KJY68712.1};
OS   Vibrio coralliilyticus.
OC   Bacteria; Pseudomonadota; Gammaproteobacteria; Vibrionales; Vibrionaceae;
OC   Vibrio.
OX   NCBI_TaxID=190893 {ECO:0000313|EMBL:KPH27873.1, ECO:0000313|Proteomes:UP000077809};
RN   [1] {ECO:0000313|EMBL:KJY68712.1}
RP   NUCLEOTIDE SEQUENCE.
RC   STRAIN=S2052 {ECO:0000313|EMBL:KJY68712.1};
RX   PubMed=25879706; DOI=10.1186/s12864-015-1365-z;
RA   Machado H., Sonnenschein E.C., Melchiorsen J., Gram L.;
RT   "Genome mining reveals unlocked bioactive potential of marine Gram-negative
RT   bacteria.";
RL   BMC Genomics 16:158-158(2015).
RN   [2] {ECO:0000313|EMBL:KPH27873.1, ECO:0000313|Proteomes:UP000077809}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=RE22 {ECO:0000313|EMBL:KPH27873.1,
RC   ECO:0000313|Proteomes:UP000077809};
RA   Spinard E.J.III., Nelson D.R.;
RT   "Genome sequencing and assembly of V. coralliilyticus RE22.";
RL   Submitted (JUL-2015) to the EMBL/GenBank/DDBJ databases.
RN   [3] {ECO:0000313|Proteomes:UP000528382, ECO:0000313|Proteomes:UP000577246}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=AIC-5 {ECO:0000313|EMBL:NOI76400.1,
RC   ECO:0000313|Proteomes:UP000528382}, and X00-12-4
RC   {ECO:0000313|EMBL:NOH37637.1, ECO:0000313|Proteomes:UP000577246};
RA   Kehlet-Delgado H., Mueller R.S.;
RT   "Draft genome sequencing and comparative genomics of hatchery-associated
RT   Vibrios.";
RL   Submitted (SEP-2019) to the EMBL/GenBank/DDBJ databases.
CC   -!- FUNCTION: Necessary for efficient RNA polymerase transcription
CC       elongation past template-encoded arresting sites. The arresting sites
CC       in DNA have the property of trapping a certain fraction of elongating
CC       RNA polymerases that pass through, resulting in locked ternary
CC       complexes. Cleavage of the nascent transcript by cleavage factors such
CC       as GreA or GreB allows the resumption of elongation from the new
CC       3'terminus. GreA releases sequences of 2 to 3 nucleotides.
CC       {ECO:0000256|ARBA:ARBA00024916, ECO:0000256|HAMAP-Rule:MF_00105,
CC       ECO:0000256|RuleBase:RU000556}.
CC   -!- SIMILARITY: Belongs to the GreA/GreB family.
CC       {ECO:0000256|ARBA:ARBA00008213, ECO:0000256|HAMAP-Rule:MF_00105,
CC       ECO:0000256|RuleBase:RU000556}.
CC   -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC       whole genome shotgun (WGS) entry which is preliminary data.
CC       {ECO:0000313|EMBL:KPH27873.1}.
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DR   EMBL; JXXR01000021; KJY68712.1; -; Genomic_DNA.
DR   EMBL; LGLS01000001; KPH27873.1; -; Genomic_DNA.
DR   EMBL; VTYS01000004; NOH37637.1; -; Genomic_DNA.
DR   EMBL; VTXB01000004; NOI76400.1; -; Genomic_DNA.
DR   RefSeq; WP_006958072.1; NZ_VTYS01000004.1.
DR   STRING; 190893.BA953_11700; -.
DR   GeneID; 66920267; -.
DR   KEGG; vct:JV59_01715; -.
DR   KEGG; vcy:IX92_12640; -.
DR   eggNOG; COG0782; Bacteria.
DR   OrthoDB; 9808774at2; -.
DR   Proteomes; UP000077809; Unassembled WGS sequence.
DR   Proteomes; UP000528382; Unassembled WGS sequence.
DR   Proteomes; UP000577246; Unassembled WGS sequence.
DR   GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule.
DR   GO; GO:0070063; F:RNA polymerase binding; IEA:InterPro.
DR   GO; GO:0003746; F:translation elongation factor activity; IEA:UniProtKB-KW.
DR   GO; GO:0032784; P:regulation of DNA-templated transcription elongation; IEA:UniProtKB-UniRule.
DR   Gene3D; 3.10.50.30; Transcription elongation factor, GreA/GreB, C-terminal domain; 1.
DR   Gene3D; 1.10.287.180; Transcription elongation factor, GreA/GreB, N-terminal domain; 1.
DR   HAMAP; MF_00105; GreA_GreB; 1.
DR   InterPro; IPR036953; GreA/GreB_C_sf.
DR   InterPro; IPR018151; TF_GreA/GreB_CS.
DR   InterPro; IPR006359; Tscrpt_elong_fac_GreA.
DR   InterPro; IPR028624; Tscrpt_elong_fac_GreA/B.
DR   InterPro; IPR001437; Tscrpt_elong_fac_GreA/B_C.
DR   InterPro; IPR023459; Tscrpt_elong_fac_GreA/B_fam.
DR   InterPro; IPR022691; Tscrpt_elong_fac_GreA/B_N.
DR   InterPro; IPR036805; Tscrpt_elong_fac_GreA/B_N_sf.
DR   NCBIfam; TIGR01462; greA; 1.
DR   PANTHER; PTHR30437; TRANSCRIPTION ELONGATION FACTOR GREA; 1.
DR   PANTHER; PTHR30437:SF4; TRANSCRIPTION ELONGATION FACTOR GREA; 1.
DR   Pfam; PF01272; GreA_GreB; 1.
DR   Pfam; PF03449; GreA_GreB_N; 1.
DR   PIRSF; PIRSF006092; GreA_GreB; 1.
DR   SUPFAM; SSF54534; FKBP-like; 1.
DR   SUPFAM; SSF46557; GreA transcript cleavage protein, N-terminal domain; 1.
DR   PROSITE; PS00829; GREAB_1; 1.
DR   PROSITE; PS00830; GREAB_2; 1.
PE   3: Inferred from homology;
KW   DNA-binding {ECO:0000256|ARBA:ARBA00023125, ECO:0000256|HAMAP-
KW   Rule:MF_00105}; Elongation factor {ECO:0000313|EMBL:KPH27873.1};
KW   Protein biosynthesis {ECO:0000313|EMBL:KPH27873.1};
KW   Transcription {ECO:0000256|ARBA:ARBA00023163, ECO:0000256|HAMAP-
KW   Rule:MF_00105};
KW   Transcription regulation {ECO:0000256|ARBA:ARBA00023015, ECO:0000256|HAMAP-
KW   Rule:MF_00105}.
FT   DOMAIN          4..73
FT                   /note="Transcription elongation factor GreA/GreB N-
FT                   terminal"
FT                   /evidence="ECO:0000259|Pfam:PF03449"
FT   DOMAIN          82..156
FT                   /note="Transcription elongation factor GreA/GreB C-
FT                   terminal"
FT                   /evidence="ECO:0000259|Pfam:PF01272"
SQ   SEQUENCE   157 AA;  17447 MW;  E40AB2E51C62CA36 CRC64;
     MEKVPMTVRG EQKLREELDR LLKLRPQISE AIAEARELGD LKENAEYHAA REEQGICEAQ
     IRDIEYKLSV AQVIDVTKMD NSGKVIFGST VTLIDCDTEE EKTYQIVGDD EADIKAGRIS
     VSSPIARGLV GKMEGDEVVI STPGGDRDFE IDSVEYV
//
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