ID A0A098EY26_9BACI Unreviewed; 162 AA.
AC A0A098EY26;
DT 07-JAN-2015, integrated into UniProtKB/TrEMBL.
DT 07-JAN-2015, sequence version 1.
DT 27-MAR-2024, entry version 27.
DE SubName: Full=Peptidoglycan-binding protein YkuD {ECO:0000313|EMBL:CEG27289.1};
GN Name=ykuD {ECO:0000313|EMBL:CEG27289.1};
GN ORFNames=BN1002_02146 {ECO:0000313|EMBL:CEG27289.1};
OS Bacillus sp. B-jedd.
OC Bacteria; Bacillota; Bacilli; Bacillales; Bacillaceae; Bacillus.
OX NCBI_TaxID=1476857 {ECO:0000313|EMBL:CEG27289.1, ECO:0000313|Proteomes:UP000042335};
RN [1] {ECO:0000313|EMBL:CEG27289.1, ECO:0000313|Proteomes:UP000042335}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=B-jedd {ECO:0000313|EMBL:CEG27289.1,
RC ECO:0000313|Proteomes:UP000042335};
RA Urmite Genomes Urmite Genomes;
RL Submitted (SEP-2014) to the EMBL/GenBank/DDBJ databases.
CC -!- PATHWAY: Cell wall biogenesis; peptidoglycan biosynthesis.
CC {ECO:0000256|ARBA:ARBA00004752}.
CC -!- SIMILARITY: Belongs to the YkuD family.
CC {ECO:0000256|ARBA:ARBA00005992}.
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DR EMBL; CCXR01000001; CEG27289.1; -; Genomic_DNA.
DR RefSeq; WP_048824951.1; NZ_CCXR01000001.1.
DR AlphaFoldDB; A0A098EY26; -.
DR STRING; 1476857.BN1002_02146; -.
DR OrthoDB; 9787225at2; -.
DR UniPathway; UPA00219; -.
DR Proteomes; UP000042335; Unassembled WGS sequence.
DR GO; GO:0016740; F:transferase activity; IEA:UniProtKB-KW.
DR GO; GO:0009252; P:peptidoglycan biosynthetic process; IEA:UniProtKB-UniPathway.
DR CDD; cd00118; LysM; 1.
DR CDD; cd16913; YkuD_like; 1.
DR Gene3D; 2.40.440.10; L,D-transpeptidase catalytic domain-like; 1.
DR Gene3D; 3.10.350.10; LysM domain; 1.
DR InterPro; IPR005490; LD_TPept_cat_dom.
DR InterPro; IPR018392; LysM_dom.
DR InterPro; IPR036779; LysM_dom_sf.
DR InterPro; IPR038063; Transpep_catalytic_dom.
DR PANTHER; PTHR30582; L,D-TRANSPEPTIDASE; 1.
DR PANTHER; PTHR30582:SF24; L,D-TRANSPEPTIDASE ERFK_SRFK-RELATED; 1.
DR Pfam; PF01476; LysM; 1.
DR Pfam; PF03734; YkuD; 1.
DR SMART; SM00257; LysM; 1.
DR SUPFAM; SSF141523; L,D-transpeptidase catalytic domain-like; 1.
DR SUPFAM; SSF54106; LysM domain; 1.
DR PROSITE; PS51782; LYSM; 1.
PE 3: Inferred from homology;
KW Hydrolase {ECO:0000256|ARBA:ARBA00022801};
KW Reference proteome {ECO:0000313|Proteomes:UP000042335};
KW Transferase {ECO:0000256|ARBA:ARBA00022679}.
FT DOMAIN 1..43
FT /note="LysM"
FT /evidence="ECO:0000259|PROSITE:PS51782"
SQ SEQUENCE 162 AA; 17817 MW; 22280B7BB82E57A5 CRC64;
MVHIVKPGET LAIIAMNYRV SMRRLQKANP GVGILQPGQR IIIPRLPDPA TIPYQIDVSV
KKRTLALYKD GRFIKIYPIA VGKMLTATPE GEYVIVNRQP NPGGPFGVMW LSLSKAGYGI
HGTNNPSSIG KSVSHGCIRM HNRDVLELAS MVPNGTRVRI HN
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