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Database: UniProt
Entry: A0A099Y1F8_9FLAO
LinkDB: A0A099Y1F8_9FLAO
Original site: A0A099Y1F8_9FLAO 
ID   A0A099Y1F8_9FLAO        Unreviewed;       296 AA.
AC   A0A099Y1F8;
DT   07-JAN-2015, integrated into UniProtKB/TrEMBL.
DT   07-JAN-2015, sequence version 1.
DT   24-JAN-2024, entry version 36.
DE   RecName: Full=Pseudouridine synthase {ECO:0000256|RuleBase:RU003887};
DE            EC=5.4.99.- {ECO:0000256|RuleBase:RU003887};
GN   ORFNames=PHEL85_1124 {ECO:0000313|EMBL:KGL64079.1};
OS   Polaribacter sp. Hel1_85.
OC   Bacteria; Bacteroidota; Flavobacteriia; Flavobacteriales;
OC   Flavobacteriaceae.
OX   NCBI_TaxID=1250005 {ECO:0000313|EMBL:KGL64079.1, ECO:0000313|Proteomes:UP000029991};
RN   [1] {ECO:0000313|EMBL:KGL64079.1}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=Hel1_85 {ECO:0000313|EMBL:KGL64079.1};
RA   Xing P., Hahnke R.L., Unfried F., Markert S., Huang S., Barbeyron T.,
RA   Harder J., Becher D., Schweder T., Gloenk F.O., Amann R.I., Teeling H.;
RT   "Niches of two polysaccharide-degrading Polaribacter strains isolated from
RT   the North Sea during a spring diatom bloom.";
RL   ISME J. 0:0-0(2014).
CC   -!- SIMILARITY: Belongs to the pseudouridine synthase RsuA family.
CC       {ECO:0000256|ARBA:ARBA00008348, ECO:0000256|RuleBase:RU003887}.
CC   -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC       whole genome shotgun (WGS) entry which is preliminary data.
CC       {ECO:0000313|EMBL:KGL64079.1}.
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DR   EMBL; JPDS01000001; KGL64079.1; -; Genomic_DNA.
DR   RefSeq; WP_036822138.1; NZ_JPDS01000001.1.
DR   AlphaFoldDB; A0A099Y1F8; -.
DR   STRING; 1250005.PHEL85_1124; -.
DR   eggNOG; COG1187; Bacteria.
DR   OrthoDB; 9807213at2; -.
DR   Proteomes; UP000029991; Unassembled WGS sequence.
DR   GO; GO:0016829; F:lyase activity; IEA:UniProtKB-KW.
DR   GO; GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
DR   GO; GO:0120159; F:rRNA pseudouridine synthase activity; IEA:UniProt.
DR   GO; GO:0000455; P:enzyme-directed rRNA pseudouridine synthesis; IEA:UniProt.
DR   CDD; cd02554; PseudoU_synth_RluF; 1.
DR   CDD; cd00165; S4; 1.
DR   Gene3D; 3.30.70.1560; Alpha-L RNA-binding motif; 1.
DR   Gene3D; 3.30.70.580; Pseudouridine synthase I, catalytic domain, N-terminal subdomain; 1.
DR   Gene3D; 3.10.290.10; RNA-binding S4 domain; 1.
DR   InterPro; IPR042092; PsdUridine_s_RsuA/RluB/E/F_cat.
DR   InterPro; IPR020103; PsdUridine_synth_cat_dom_sf.
DR   InterPro; IPR006145; PsdUridine_synth_RsuA/RluA.
DR   InterPro; IPR000748; PsdUridine_synth_RsuA/RluB/E/F.
DR   InterPro; IPR018496; PsdUridine_synth_RsuA/RluB_CS.
DR   InterPro; IPR002942; S4_RNA-bd.
DR   InterPro; IPR036986; S4_RNA-bd_sf.
DR   InterPro; IPR020094; TruA/RsuA/RluB/E/F_N.
DR   NCBIfam; TIGR00093; pseudouridine synthase; 1.
DR   PANTHER; PTHR47683; PSEUDOURIDINE SYNTHASE FAMILY PROTEIN-RELATED; 1.
DR   PANTHER; PTHR47683:SF2; S4 RNA-BINDING DOMAIN-CONTAINING PROTEIN; 1.
DR   Pfam; PF00849; PseudoU_synth_2; 1.
DR   Pfam; PF01479; S4; 1.
DR   SMART; SM00363; S4; 1.
DR   SUPFAM; SSF55174; Alpha-L RNA-binding motif; 1.
DR   SUPFAM; SSF55120; Pseudouridine synthase; 1.
DR   PROSITE; PS01149; PSI_RSU; 1.
DR   PROSITE; PS50889; S4; 1.
PE   3: Inferred from homology;
KW   Isomerase {ECO:0000256|ARBA:ARBA00023235, ECO:0000256|RuleBase:RU003887};
KW   Lyase {ECO:0000313|EMBL:KGL64079.1};
KW   RNA-binding {ECO:0000256|PROSITE-ProRule:PRU00182}.
FT   DOMAIN          9..66
FT                   /note="RNA-binding S4"
FT                   /evidence="ECO:0000259|SMART:SM00363"
FT   REGION          236..296
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        260..274
FT                   /note="Basic and acidic residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        276..296
FT                   /note="Basic residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ   SEQUENCE   296 AA;  33767 MW;  B28D3B921B9EBB36 CRC64;
     MDKNNQQSTN LNKYISSSGI CSRREAERFI NEGRVTINGK PTQLGNRVGK KDVVKLDGRI
     VKPKNTTLYI ALNKPVGIVS TTDEREPNNI VKHVNYPERL FPIGRLDKPS EGLIFLTNDG
     DIVNKILRAG NNHEKEYFVT VNKSITDAFI QKMGSGIPIL GTVTKNCLVE KVSDKIFKIV
     LTQGLNRQIR RMCEYLDYEV TKLKRTRIMN VELGYLQAGD WRELTEEEMK EINKMISTSS
     KTEEASVVKE KPKAQKPKRK QAPTKNDFNK KSASFRKSSP KNKKKKSGFS SKKKRW
//
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