ID A0A0A0ATR3_CHAVO Unreviewed; 854 AA.
AC A0A0A0ATR3;
DT 07-JAN-2015, integrated into UniProtKB/TrEMBL.
DT 07-JAN-2015, sequence version 1.
DT 27-MAR-2024, entry version 26.
DE SubName: Full=Exosome component 10 {ECO:0000313|EMBL:KGL96918.1};
DE Flags: Fragment;
GN ORFNames=N301_11352 {ECO:0000313|EMBL:KGL96918.1};
OS Charadrius vociferus (Killdeer) (Aegialitis vocifera).
OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
OC Coelurosauria; Aves; Neognathae; Charadriiformes; Charadriidae; Charadrius.
OX NCBI_TaxID=50402 {ECO:0000313|EMBL:KGL96918.1, ECO:0000313|Proteomes:UP000053858};
RN [1] {ECO:0000313|EMBL:KGL96918.1, ECO:0000313|Proteomes:UP000053858}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=BGI_N301 {ECO:0000313|EMBL:KGL96918.1};
RA Zhang G., Li C.;
RT "Genome evolution of avian class.";
RL Submitted (JUN-2014) to the EMBL/GenBank/DDBJ databases.
CC -!- SIMILARITY: Belongs to the exosome component 10/RRP6 family.
CC {ECO:0000256|ARBA:ARBA00043957}.
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DR EMBL; KL872854; KGL96918.1; -; Genomic_DNA.
DR AlphaFoldDB; A0A0A0ATR3; -.
DR STRING; 50402.A0A0A0ATR3; -.
DR Proteomes; UP000053858; Unassembled WGS sequence.
DR GO; GO:0000176; C:nuclear exosome (RNase complex); IEA:InterPro.
DR GO; GO:0005730; C:nucleolus; IEA:UniProtKB-SubCell.
DR GO; GO:0000175; F:3'-5'-RNA exonuclease activity; IEA:InterPro.
DR GO; GO:0003676; F:nucleic acid binding; IEA:InterPro.
DR GO; GO:0000166; F:nucleotide binding; IEA:InterPro.
DR GO; GO:0000467; P:exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA); IEA:InterPro.
DR CDD; cd06147; Rrp6p_like_exo; 1.
DR Gene3D; 1.10.150.80; HRDC domain; 1.
DR Gene3D; 3.30.420.10; Ribonuclease H-like superfamily/Ribonuclease H; 1.
DR InterPro; IPR002562; 3'-5'_exonuclease_dom.
DR InterPro; IPR012588; Exosome-assoc_fac_Rrp6_N.
DR InterPro; IPR010997; HRDC-like_sf.
DR InterPro; IPR002121; HRDC_dom.
DR InterPro; IPR044876; HRDC_dom_sf.
DR InterPro; IPR012337; RNaseH-like_sf.
DR InterPro; IPR036397; RNaseH_sf.
DR InterPro; IPR045092; Rrp6-like.
DR InterPro; IPR049559; Rrp6p-like_exo.
DR PANTHER; PTHR12124:SF47; EXOSOME COMPONENT 10; 1.
DR PANTHER; PTHR12124; POLYMYOSITIS/SCLERODERMA AUTOANTIGEN-RELATED; 1.
DR Pfam; PF01612; DNA_pol_A_exo1; 1.
DR Pfam; PF00570; HRDC; 1.
DR Pfam; PF08066; PMC2NT; 1.
DR SMART; SM00474; 35EXOc; 1.
DR SMART; SM00341; HRDC; 1.
DR SUPFAM; SSF47819; HRDC-like; 1.
DR SUPFAM; SSF53098; Ribonuclease H-like; 1.
DR PROSITE; PS50967; HRDC; 1.
PE 3: Inferred from homology;
KW Exosome {ECO:0000256|ARBA:ARBA00022835};
KW Reference proteome {ECO:0000313|Proteomes:UP000053858};
KW rRNA processing {ECO:0000256|ARBA:ARBA00022552}.
FT DOMAIN 468..548
FT /note="HRDC"
FT /evidence="ECO:0000259|PROSITE:PS50967"
FT REGION 699..726
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 742..854
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 702..716
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 745..776
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 787..809
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT NON_TER 1
FT /evidence="ECO:0000313|EMBL:KGL96918.1"
FT NON_TER 854
FT /evidence="ECO:0000313|EMBL:KGL96918.1"
SQ SEQUENCE 854 AA; 98177 MW; 2330D32193AD6C39 CRC64;
LAQYALGTVV AATKASNGLP QPGDEYDFYR SFPGFRAYCE TQGDRLLHCM SKVMQYHGCR
SYMKDRSKVT ELDDKFDMLV DSNDVILERV GILLDEAAGV NKNQQPVLPA GLQPPQTIVS
SWNRKAGESH KRTQSETFRL LHAKNISRPQ LKFREKIDNS NTPFVPKLFI KPNALKPLPE
ALTKSGRERK ERPEDLDVPA ALADFIHQQR TQQTEQDMFA HPYQYELEHF SPPDGVLKKP
EPQMYRPIKE TPCHFITTLD ELVELNEKLM NCKEFALDLE HHSYRSFLGL TCLMQISTRT
EDFIIDTLEL RSDMNILNET FTDPAIVKVL HGADSDVEWL QKDFGLYLVN MFDTHQAARL
LNLGRHSLDH LLKLYCNVDA DKQYQLADWR IRPLPEEMIR YARDDTHYLL YIYDKVREAL
WERGNEQPTQ LQVVWQRSKD ICLKKYIKPL FSDESYLELY RRQKKHLNTQ QLAAFRLLFA
WRDKMARQED ESTGYVLPNH MLLKISEELP KEPQGIIACC NPIPPLVRQQ INELHLLIQQ
AREMPLLKSE IAVAVKKRAP LSNPEKLENT LFGPHDSSRI PVADFQNSST LEPAPILEHG
CLFSDSEKTM NIQGVQPEST CLVATATVSI FSECDEDEGN EKALTTAQQK AQRIMESFEN
PFRMYLPSEQ NPAYVSQSAK FDPSSKIYEI SNRWKLMSQT QAQKESKDEM KKKAAQQSAA
RDQAQKVYKE ATENIVSVRQ QAMQEQANKK RERVMSETGT ELPKQEKKRP KASQQPEELE
APKQFTPFDY SKSNFKVFAG SSKPKQSPQF DPAKQAYAGK KLAGANKLQQ SGNRSMSYLA
GKAERGSRHH WPKR
//
