ID A0A0A0JGF2_9MICO Unreviewed; 561 AA.
AC A0A0A0JGF2;
DT 07-JAN-2015, integrated into UniProtKB/TrEMBL.
DT 07-JAN-2015, sequence version 1.
DT 24-JAN-2024, entry version 38.
DE RecName: Full=Ribonuclease J {ECO:0000256|HAMAP-Rule:MF_01491};
DE Short=RNase J {ECO:0000256|HAMAP-Rule:MF_01491};
DE EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_01491};
GN Name=rnj {ECO:0000256|HAMAP-Rule:MF_01491};
GN ORFNames=N802_00960 {ECO:0000313|EMBL:KGN34691.1};
OS Knoellia sinensis KCTC 19936.
OC Bacteria; Actinomycetota; Actinomycetes; Micrococcales; Intrasporangiaceae;
OC Knoellia.
OX NCBI_TaxID=1385520 {ECO:0000313|EMBL:KGN34691.1, ECO:0000313|Proteomes:UP000030002};
RN [1] {ECO:0000313|EMBL:KGN34691.1, ECO:0000313|Proteomes:UP000030002}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=KCTC 19936 {ECO:0000313|EMBL:KGN34691.1,
RC ECO:0000313|Proteomes:UP000030002};
RA Zhu W., Wang G.;
RT "The genome sequence of Knoellia sinensis.";
RL Submitted (AUG-2013) to the EMBL/GenBank/DDBJ databases.
CC -!- FUNCTION: An RNase that has 5'-3' exonuclease and possibly endonuclease
CC activity. Involved in maturation of rRNA and in some organisms also
CC mRNA maturation and/or decay. {ECO:0000256|HAMAP-Rule:MF_01491}.
CC -!- SUBUNIT: Homodimer, may be a subunit of the RNA degradosome.
CC {ECO:0000256|HAMAP-Rule:MF_01491}.
CC -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000256|HAMAP-Rule:MF_01491}.
CC -!- SIMILARITY: Belongs to the metallo-beta-lactamase superfamily. RNA-
CC metabolizing metallo-beta-lactamase-like family. Bacterial RNase J
CC subfamily. {ECO:0000256|HAMAP-Rule:MF_01491}.
CC -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC whole genome shotgun (WGS) entry which is preliminary data.
CC {ECO:0000313|EMBL:KGN34691.1}.
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DR EMBL; AVPJ01000001; KGN34691.1; -; Genomic_DNA.
DR RefSeq; WP_035910911.1; NZ_AVPJ01000001.1.
DR AlphaFoldDB; A0A0A0JGF2; -.
DR STRING; 1385520.N802_00960; -.
DR eggNOG; COG0595; Bacteria.
DR OrthoDB; 9770211at2; -.
DR Proteomes; UP000030002; Unassembled WGS sequence.
DR GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
DR GO; GO:0004534; F:5'-3' RNA exonuclease activity; IEA:UniProtKB-UniRule.
DR GO; GO:0003723; F:RNA binding; IEA:UniProtKB-UniRule.
DR GO; GO:0004521; F:RNA endonuclease activity; IEA:UniProtKB-UniRule.
DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro.
DR GO; GO:0006364; P:rRNA processing; IEA:UniProtKB-UniRule.
DR CDD; cd07714; RNaseJ_MBL-fold; 1.
DR Gene3D; 3.10.20.580; -; 1.
DR Gene3D; 3.40.50.10710; Metallo-hydrolase/oxidoreductase; 1.
DR Gene3D; 3.60.15.10; Ribonuclease Z/Hydroxyacylglutathione hydrolase-like; 1.
DR HAMAP; MF_01491; RNase_J_bact; 1.
DR InterPro; IPR001279; Metallo-B-lactamas.
DR InterPro; IPR036866; RibonucZ/Hydroxyglut_hydro.
DR InterPro; IPR011108; RMMBL.
DR InterPro; IPR004613; RNase_J.
DR InterPro; IPR042173; RNase_J_2.
DR InterPro; IPR030854; RNase_J_bac.
DR InterPro; IPR041636; RNase_J_C.
DR NCBIfam; TIGR00649; MG423; 1.
DR PANTHER; PTHR43694; RIBONUCLEASE J; 1.
DR PANTHER; PTHR43694:SF1; RIBONUCLEASE J; 1.
DR Pfam; PF00753; Lactamase_B; 1.
DR Pfam; PF07521; RMMBL; 1.
DR Pfam; PF17770; RNase_J_C; 1.
DR PIRSF; PIRSF004803; RnjA; 1.
DR SMART; SM00849; Lactamase_B; 1.
DR SUPFAM; SSF56281; Metallo-hydrolase/oxidoreductase; 1.
PE 3: Inferred from homology;
KW Cytoplasm {ECO:0000256|ARBA:ARBA00022490, ECO:0000256|HAMAP-Rule:MF_01491};
KW Endonuclease {ECO:0000256|HAMAP-Rule:MF_01491};
KW Exonuclease {ECO:0000256|ARBA:ARBA00022839, ECO:0000256|HAMAP-
KW Rule:MF_01491};
KW Hydrolase {ECO:0000256|ARBA:ARBA00022801, ECO:0000256|HAMAP-Rule:MF_01491};
KW Metal-binding {ECO:0000256|ARBA:ARBA00022723};
KW Nuclease {ECO:0000256|ARBA:ARBA00022722, ECO:0000256|HAMAP-Rule:MF_01491};
KW RNA-binding {ECO:0000256|ARBA:ARBA00022884, ECO:0000256|HAMAP-
KW Rule:MF_01491}; rRNA processing {ECO:0000256|HAMAP-Rule:MF_01491};
KW Zinc {ECO:0000256|ARBA:ARBA00022833}.
FT DOMAIN 31..225
FT /note="Metallo-beta-lactamase"
FT /evidence="ECO:0000259|SMART:SM00849"
FT BINDING 373..377
FT /ligand="substrate"
FT /evidence="ECO:0000256|HAMAP-Rule:MF_01491,
FT ECO:0000256|PIRSR:PIRSR004803-2"
SQ SEQUENCE 561 AA; 60779 MW; 9CCF03DB52A81D37 CRC64;
MSHPHPELSL PAPLKDGGVR VVALGGLGEV GRNMAVIEHK GQLLVIDCGV LFPDDHHPGI
DLILPDFSSI QDRLDDIQAI VLTHGHEDHI GAVPYLLKLK PDIPLVGSQL TLALIEAKLK
EHRIKPYTLT VREGARETLG VFDCEFVAVN HSIPDALAVF VRTSGGTLLH TGDFKMDQLP
LDGRLTDLRA FARLGEEGVD LFLTDSTNAE VPGFTTPEKD IAPAIDRVFR HAKRRIIVAC
FSSHVHRVQQ VLDAAEKSGR KVAMVGRSMV RNMGIAADLG YLHVPDNILV DFKKLGDLPD
HKVTLICTGS QGEPMAALSR MANRDHQIEV GEGDTVLMAS SLIPGNENAV YRVINGLMRL
GADVVHKGNA KVHVSGHASA GELLYCYNIV KPRNVMPVHG EWRHLRANAD LALATGVHPK
GVVVVEDGVV VDLVDGKVRV AGAVPCGYVY VDGSSVGEAD EALLKDRQIL RDEGFISVIV
VMDSSSGKIV AGPEITARGF VEDDVIFDDV MPKLTQALDD ATSQGVSDTY QLEQVMRRTV
GGWVGRKIRR RPMIIPVVIE A
//
