ID A0A0A0LX39_CUCSA Unreviewed; 1085 AA.
AC A0A0A0LX39;
DT 07-JAN-2015, integrated into UniProtKB/TrEMBL.
DT 07-JAN-2015, sequence version 1.
DT 27-MAR-2024, entry version 40.
DE RecName: Full=Phytochrome {ECO:0008006|Google:ProtNLM};
GN ORFNames=Csa_1G461000 {ECO:0000313|EMBL:KGN65574.1};
OS Cucumis sativus (Cucumber).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis.
OX NCBI_TaxID=3659 {ECO:0000313|EMBL:KGN65574.1, ECO:0000313|Proteomes:UP000029981};
RN [1] {ECO:0000313|EMBL:KGN65574.1, ECO:0000313|Proteomes:UP000029981}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. 9930 {ECO:0000313|Proteomes:UP000029981};
RX PubMed=19881527; DOI=10.1038/ng.475;
RA Huang S., Li R., Zhang Z., Li L., Gu X., Fan W., Lucas W.J., Wang X.,
RA Xie B., Ni P., Ren Y., Zhu H., Li J., Lin K., Jin W., Fei Z., Li G.,
RA Staub J., Kilian A., van der Vossen E.A., Wu Y., Guo J., He J., Jia Z.,
RA Ren Y., Tian G., Lu Y., Ruan J., Qian W., Wang M., Huang Q., Li B.,
RA Xuan Z., Cao J., Asan null, Wu Z., Zhang J., Cai Q., Bai Y., Zhao B.,
RA Han Y., Li Y., Li X., Wang S., Shi Q., Liu S., Cho W.K., Kim J.Y., Xu Y.,
RA Heller-Uszynska K., Miao H., Cheng Z., Zhang S., Wu J., Yang Y., Kang H.,
RA Li M., Liang H., Ren X., Shi Z., Wen M., Jian M., Yang H., Zhang G.,
RA Yang Z., Chen R., Liu S., Li J., Ma L., Liu H., Zhou Y., Zhao J., Fang X.,
RA Li G., Fang L., Li Y., Liu D., Zheng H., Zhang Y., Qin N., Li Z., Yang G.,
RA Yang S., Bolund L., Kristiansen K., Zheng H., Li S., Zhang X., Yang H.,
RA Wang J., Sun R., Zhang B., Jiang S., Wang J., Du Y., Li S.;
RT "The genome of the cucumber, Cucumis sativus L.";
RL Nat. Genet. 41:1275-1281(2009).
CC -!- SIMILARITY: Belongs to the phytochrome family.
CC {ECO:0000256|ARBA:ARBA00008235}.
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DR EMBL; CM002922; KGN65574.1; -; Genomic_DNA.
DR AlphaFoldDB; A0A0A0LX39; -.
DR STRING; 3659.A0A0A0LX39; -.
DR EnsemblPlants; KGN65574; KGN65574; Csa_1G461000.
DR Gramene; KGN65574; KGN65574; Csa_1G461000.
DR eggNOG; ENOG502R3WG; Eukaryota.
DR OMA; IMRESIQ; -.
DR Proteomes; UP000029981; Chromosome 1.
DR GO; GO:0005634; C:nucleus; IBA:GO_Central.
DR GO; GO:0000155; F:phosphorelay sensor kinase activity; IEA:InterPro.
DR GO; GO:0009881; F:photoreceptor activity; IEA:UniProtKB-KW.
DR GO; GO:0009584; P:detection of visible light; IEA:InterPro.
DR GO; GO:0006355; P:regulation of DNA-templated transcription; IEA:InterPro.
DR CDD; cd00082; HisKA; 1.
DR CDD; cd00130; PAS; 2.
DR Gene3D; 3.30.450.270; -; 1.
DR Gene3D; 3.30.450.40; -; 1.
DR Gene3D; 3.30.450.20; PAS domain; 3.
DR InterPro; IPR003018; GAF.
DR InterPro; IPR029016; GAF-like_dom_sf.
DR InterPro; IPR005467; His_kinase_dom.
DR InterPro; IPR003661; HisK_dim/P.
DR InterPro; IPR000014; PAS.
DR InterPro; IPR035965; PAS-like_dom_sf.
DR InterPro; IPR013654; PAS_2.
DR InterPro; IPR013767; PAS_fold.
DR InterPro; IPR016132; Phyto_chromo_attachment.
DR InterPro; IPR013516; Phyto_chromo_BS.
DR InterPro; IPR001294; Phytochrome.
DR InterPro; IPR013515; Phytochrome_cen-reg.
DR InterPro; IPR043150; Phytochrome_PHY_sf.
DR NCBIfam; TIGR00229; sensory_box; 1.
DR PANTHER; PTHR47876; OS08G0260000 PROTEIN; 1.
DR PANTHER; PTHR47876:SF3; PHYTOCHROME 1; 1.
DR Pfam; PF01590; GAF; 1.
DR Pfam; PF00512; HisKA; 1.
DR Pfam; PF00989; PAS; 2.
DR Pfam; PF08446; PAS_2; 1.
DR Pfam; PF00360; PHY; 1.
DR PRINTS; PR01033; PHYTOCHROME.
DR SMART; SM00065; GAF; 1.
DR SMART; SM00388; HisKA; 1.
DR SMART; SM00091; PAS; 2.
DR SUPFAM; SSF55781; GAF domain-like; 2.
DR SUPFAM; SSF55785; PYP-like sensor domain (PAS domain); 3.
DR PROSITE; PS50109; HIS_KIN; 1.
DR PROSITE; PS50112; PAS; 2.
DR PROSITE; PS00245; PHYTOCHROME_1; 1.
DR PROSITE; PS50046; PHYTOCHROME_2; 1.
PE 3: Inferred from homology;
KW Chromophore {ECO:0000256|ARBA:ARBA00022991};
KW Photoreceptor protein {ECO:0000256|ARBA:ARBA00022543};
KW Receptor {ECO:0000256|ARBA:ARBA00023170};
KW Reference proteome {ECO:0000313|Proteomes:UP000029981};
KW Sensory transduction {ECO:0000256|ARBA:ARBA00022606};
KW Transcription {ECO:0000256|ARBA:ARBA00023163};
KW Transcription regulation {ECO:0000256|ARBA:ARBA00023015}.
FT DOMAIN 232..393
FT /note="Phytochrome chromophore attachment site"
FT /evidence="ECO:0000259|PROSITE:PS50046"
FT DOMAIN 618..689
FT /note="PAS"
FT /evidence="ECO:0000259|PROSITE:PS50112"
FT DOMAIN 752..804
FT /note="PAS"
FT /evidence="ECO:0000259|PROSITE:PS50112"
FT DOMAIN 900..1055
FT /note="Histidine kinase"
FT /evidence="ECO:0000259|PROSITE:PS50109"
FT REGION 1..36
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 10..36
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 1085 AA; 120153 MW; C4B62740E6C00ACC CRC64;
MDKLNRSSDR GMAAFSSSAD SNTRAPPPPT TTSTDNRLAA LVQYNADAGL LNKFELSDAS
GESFNYSRSV LEAPVSVPEE QITAYLSKIQ RGGLVQPFGC LLAIEESSFK IISFSENCFE
LLGLNDDQFG SAQGKKGLIG VDMRALFTPS SGASLAKAAS SREISLLNPV WVYSRTTQKP
FYAILHRIDV GIVIDLEPAR SVDPALSLAG AVQSQKLAVR AISRLQALPS GDIGILCDTV
VEDIQKLTGY DRVMVYKFHD DEHGEVVSEI RRSDLEPYLG LHYPAIDIPQ AARFLFKQNR
IRMICDCNAK PVPVIQSDDL KQPLCLVNST IRAPHSCHLQ YMANMSTLSS LAMAIVMNSD
DSPTRLWGLV VCHHTSPRYV PFPLRYACEF LMQAFGLQLY MELQLASQLT EKKILKTQTL
LCDMLLRGSP CALLTRSPSI MDLVKCDGAA LYYKGACYLL GITPTEAQVK DLAEWILNNH
GDSTGLSTDS LADAGYPEAA SLGDAVCGMA TARITSKDFL FWFRSHVAKE IQWGGAKHHP
DDKDDSGRMH PRSSFKAFLE VAKSRSLSWE VQEINAIHSL QLIMRESFPN SGDSNSKAEN
SPQLSDAEMQ DINELSSVAC EMVRLIETAT VPIFGVDSTG LINGWNAKIS ELVGLHTGEA
LGKSLVNEIV HEDSRGTAED LLSCALQGKE DKNVELKLRS FRTDKEHPNV YIVVNACTSR
DYTNKVVGVC FVGQDLTSEK GVMDKFIRLQ GDYKTIIESL SPLIPPMFVS DENGYCCEWT
AAMEKLTGWR KNEVVGKMLA GEIFGNFCRL KGLDTLTRFM ILLYQGISGQ VTEKFPLGFF
NKDGNYVDVL LTSNKRTDAE GNAIGCICFL QIVQPNLHGV LEGLGTGDRE AILQHKELSF
LKHEVKNPLN GLRFMHELLV NSGITENQKL FLDTSDACER QIMTIIEDMD FRSLEGGQVE
INRQDFLLGS VLDAIICQIM IVVRERNIQL FHEIPEEIKT LTLCGDQIKL QMVLSDFLLN
IVQYAPVLDG WVEIKISSGL KLIQDGNEHI HLQIRYFSNS SILLVYRTSS LVLLDFVRFC
GLVVG
//
