ID A0A0A1FDH3_9BURK Unreviewed; 459 AA.
AC A0A0A1FDH3;
DT 04-FEB-2015, integrated into UniProtKB/TrEMBL.
DT 04-FEB-2015, sequence version 1.
DT 27-MAR-2024, entry version 33.
DE SubName: Full=ATP-dependent 23S rRNA helicase DbpA {ECO:0000313|EMBL:AIY41825.1};
GN Name=dbpA {ECO:0000313|EMBL:AIY41825.1};
GN ORFNames=LT85_2667 {ECO:0000313|EMBL:AIY41825.1};
OS Collimonas arenae.
OC Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
OC Oxalobacteraceae; Collimonas.
OX NCBI_TaxID=279058 {ECO:0000313|EMBL:AIY41825.1, ECO:0000313|Proteomes:UP000030302};
RN [1] {ECO:0000313|EMBL:AIY41825.1, ECO:0000313|Proteomes:UP000030302}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=Cal35 {ECO:0000313|EMBL:AIY41825.1,
RC ECO:0000313|Proteomes:UP000030302};
RA Uroz S., Tech J.J., Sawaya N.A., Frey-Klett P., Leveau J.H.J.;
RT "Structure and function of bacterial communities in ageing soils: insights
RT from the Mendocino ecological staircase.";
RL Soil Biol. Biochem. 69:265-274(2014).
CC -!- SIMILARITY: Belongs to the DEAD box helicase family.
CC {ECO:0000256|RuleBase:RU000492}.
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DR EMBL; CP009962; AIY41825.1; -; Genomic_DNA.
DR RefSeq; WP_038489436.1; NZ_CP009962.1.
DR AlphaFoldDB; A0A0A1FDH3; -.
DR STRING; 279058.LT85_2667; -.
DR KEGG; care:LT85_2667; -.
DR HOGENOM; CLU_003041_1_3_4; -.
DR OrthoDB; 5297934at2; -.
DR Proteomes; UP000030302; Chromosome.
DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-KW.
DR GO; GO:0016787; F:hydrolase activity; IEA:UniProtKB-KW.
DR GO; GO:0003676; F:nucleic acid binding; IEA:InterPro.
DR GO; GO:0003724; F:RNA helicase activity; IEA:InterPro.
DR CDD; cd00268; DEADc; 1.
DR CDD; cd12501; RRM_EcDbpA_like; 1.
DR CDD; cd18787; SF2_C_DEAD; 1.
DR Gene3D; 3.30.70.330; -; 1.
DR Gene3D; 3.40.50.300; P-loop containing nucleotide triphosphate hydrolases; 2.
DR InterPro; IPR005580; DbpA/CsdA_RNA-bd_dom.
DR InterPro; IPR011545; DEAD/DEAH_box_helicase_dom.
DR InterPro; IPR014001; Helicase_ATP-bd.
DR InterPro; IPR001650; Helicase_C.
DR InterPro; IPR012677; Nucleotide-bd_a/b_plait_sf.
DR InterPro; IPR027417; P-loop_NTPase.
DR InterPro; IPR000629; RNA-helicase_DEAD-box_CS.
DR InterPro; IPR014014; RNA_helicase_DEAD_Q_motif.
DR PANTHER; PTHR47959:SF19; ATP-DEPENDENT RNA HELICASE DBPA; 1.
DR PANTHER; PTHR47959; ATP-DEPENDENT RNA HELICASE RHLE-RELATED; 1.
DR Pfam; PF03880; DbpA; 1.
DR Pfam; PF00270; DEAD; 1.
DR Pfam; PF00271; Helicase_C; 1.
DR SMART; SM00487; DEXDc; 1.
DR SMART; SM00490; HELICc; 1.
DR SUPFAM; SSF52540; P-loop containing nucleoside triphosphate hydrolases; 1.
DR PROSITE; PS00039; DEAD_ATP_HELICASE; 1.
DR PROSITE; PS51192; HELICASE_ATP_BIND_1; 1.
DR PROSITE; PS51194; HELICASE_CTER; 1.
DR PROSITE; PS51195; Q_MOTIF; 1.
PE 3: Inferred from homology;
KW ATP-binding {ECO:0000256|ARBA:ARBA00022840, ECO:0000256|RuleBase:RU000492};
KW Helicase {ECO:0000256|ARBA:ARBA00022806, ECO:0000256|RuleBase:RU000492};
KW Hydrolase {ECO:0000256|ARBA:ARBA00022801, ECO:0000256|RuleBase:RU000492};
KW Nucleotide-binding {ECO:0000256|ARBA:ARBA00022741,
KW ECO:0000256|RuleBase:RU000492}.
FT DOMAIN 4..32
FT /note="DEAD-box RNA helicase Q"
FT /evidence="ECO:0000259|PROSITE:PS51195"
FT DOMAIN 35..206
FT /note="Helicase ATP-binding"
FT /evidence="ECO:0000259|PROSITE:PS51192"
FT DOMAIN 235..376
FT /note="Helicase C-terminal"
FT /evidence="ECO:0000259|PROSITE:PS51194"
FT MOTIF 4..32
FT /note="Q motif"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00552"
SQ SEQUENCE 459 AA; 50462 MW; 4D761C94B896CF71 CRC64;
MKTTSFNNLP LAPALLSNLD SLGYHEMTAI QAQSLPVILE RRDLIAQAKT GSGKTAAFGI
GILHKLNPSY FAIQALVLCP TRELADQVAK ELRRLARFAD NVKVLTLCGG TPMGPQIGSL
EHGAHIIVGT PGRIRDHIGR GSINLGTVQT LVLDEADRMV DMGFYEEISG IVSACPARRQ
TLLFSATYPD DIRKASAEFL RDAVEVKVEA QHDEGRIEQR FYEVSYEGRN AAVAQLLNHY
KPVSTIAFCN TKIHCRELAD ELRAQGFSAL ALYGELEQRE RDEILVRFAN QSCSVLVATD
VAARGLDIQT LGAVINVDVS KDTEVHIHRI GRTGRGQDRG LALSLCAPNE KKWVKLIEDY
QQGPVNWFDL TDLEPAYGEP LTAPMLTLCI MGGKKDKLRP GDLLGALTGD VGLSKEQVGK
ISVFEFVTYV ALDRRIAKQA FSKLSNGNIK GKNFKMRFI
//
