ID A0A0B0PJ54_GOSAR Unreviewed; 1110 AA.
AC A0A0B0PJ54;
DT 04-MAR-2015, integrated into UniProtKB/TrEMBL.
DT 04-MAR-2015, sequence version 1.
DT 27-MAR-2024, entry version 37.
DE RecName: Full=RNA-dependent RNA polymerase {ECO:0000256|RuleBase:RU363098};
DE EC=2.7.7.48 {ECO:0000256|RuleBase:RU363098};
GN ORFNames=F383_00397 {ECO:0000313|EMBL:KHG29625.1}, F383_09031
GN {ECO:0000313|EMBL:KHG26498.1};
OS Gossypium arboreum (Tree cotton) (Gossypium nanking).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium.
OX NCBI_TaxID=29729 {ECO:0000313|EMBL:KHG26498.1, ECO:0000313|Proteomes:UP000032142};
RN [1] {ECO:0000313|EMBL:KHG26498.1}
RP NUCLEOTIDE SEQUENCE.
RA Mudge J., Ramaraj T., Lindquist I.E., Bharti A.K., Sundararajan A.,
RA Cameron C.T., Woodward J.E., May G.D., Brubaker C., Broadhvest J.,
RA Wilkins T.A.;
RT "G. arboreum L. cv. AKA8401 A2 genome assembly version 1.0.";
RL Submitted (SEP-2014) to the EMBL/GenBank/DDBJ databases.
RN [2] {ECO:0000313|Proteomes:UP000032142}
RP NUCLEOTIDE SEQUENCE.
RC STRAIN=cv. AKA8401 {ECO:0000313|Proteomes:UP000032142};
RA Mudge J., Ramaraj T., Lindquist I.E., Bharti A.K., Sundararajan A.,
RA Cameron C.T., Woodward J.E., May G.D., Brubaker C., Broadhvest J.,
RA Wilkins T.A.;
RL Submitted (SEP-2014) to the EMBL/GenBank/DDBJ databases.
CC -!- FUNCTION: Probably involved in the RNA silencing pathway and required
CC for the generation of small interfering RNAs (siRNAs).
CC {ECO:0000256|RuleBase:RU363098}.
CC -!- CATALYTIC ACTIVITY:
CC Reaction=a ribonucleoside 5'-triphosphate + RNA(n) = diphosphate +
CC RNA(n+1); Xref=Rhea:RHEA:21248, Rhea:RHEA-COMP:14527, Rhea:RHEA-
CC COMP:17342, ChEBI:CHEBI:33019, ChEBI:CHEBI:61557, ChEBI:CHEBI:140395;
CC EC=2.7.7.48; Evidence={ECO:0000256|ARBA:ARBA00024517,
CC ECO:0000256|RuleBase:RU363098};
CC -!- SIMILARITY: Belongs to the RdRP family. {ECO:0000256|ARBA:ARBA00005762,
CC ECO:0000256|RuleBase:RU363098}.
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DR EMBL; KN436935; KHG26498.1; -; Genomic_DNA.
DR EMBL; KN450836; KHG29625.1; -; Genomic_DNA.
DR RefSeq; XP_017620410.1; XM_017764921.1.
DR SMR; A0A0B0PJ54; -.
DR GeneID; 108464563; -.
DR KEGG; gab:108464563; -.
DR OMA; CYNEGYE; -.
DR OrthoDB; 5477883at2759; -.
DR Proteomes; UP000032142; Unassembled WGS sequence.
DR GO; GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
DR GO; GO:0003968; F:RNA-dependent RNA polymerase activity; IEA:UniProtKB-KW.
DR GO; GO:0031047; P:regulatory ncRNA-mediated gene silencing; IEA:UniProtKB-KW.
DR InterPro; IPR007855; RNA-dep_RNA_pol_euk-typ.
DR PANTHER; PTHR23079; RNA-DEPENDENT RNA POLYMERASE; 1.
DR PANTHER; PTHR23079:SF55; RNA-DIRECTED RNA POLYMERASE; 1.
DR Pfam; PF05183; RdRP; 1.
PE 3: Inferred from homology;
KW Nucleotidyltransferase {ECO:0000256|RuleBase:RU363098};
KW Reference proteome {ECO:0000313|Proteomes:UP000032142};
KW RNA-binding {ECO:0000256|ARBA:ARBA00022884, ECO:0000256|RuleBase:RU363098};
KW RNA-directed RNA polymerase {ECO:0000256|ARBA:ARBA00022484,
KW ECO:0000256|RuleBase:RU363098};
KW RNA-mediated gene silencing {ECO:0000256|RuleBase:RU363098};
KW Transferase {ECO:0000256|ARBA:ARBA00022679, ECO:0000256|RuleBase:RU363098}.
SQ SEQUENCE 1110 AA; 127985 MW; 54495C5DD3C30902 CRC64;
MGKTIQVYGF LSDVSAGEVK TFLEGYTGRE TVYALKIRQH KKSGRAYAIV QFTRSSDAGL
IIRLANQRLY YGRSYLKARE METDIVPKPR VFLHTMERVT VNFGCQVSEE KFYVLWKADN
VTLNFGTGMR KLEFLLSYCS SKYKLELFYE NIWQIELRCP HSQTSKHLLI QLFGAPRIYE
TEVRASECVF DDPLLNYFKD MPDDQWVRTT DFTRSNCIGQ SSVLCLELPH NLQLPNFREN
FAYYKENEGR LVLESGSSYS CNLSLVPIVC PSRVIDLPFE ILFKVNLLVQ NGCIPGPALD
DTFYRLVDPC RMHKVYIDHA LEKLYYLREC CYEPSRWLFE EYKNFSRSRK YQGSPTISLD
EGLVYVRRVQ ITPSRVYFCG PEINVSNRVL RQFHNDIDNF LRISFVDEEL EKIHSTNVQA
RGRRTGIYKR ILSTLRNGIV IGNKRFEFLA FSSSQLRENS AWMFASRKGL TAADIRSWMG
NFSKIRNVAK YAARLGQSFS SSTETLSVSK DEINLIPDIE IMKDGIKYVF SDGIGKISAE
FAKKVAAKCR LKGCTPSAFQ IRIGGFKGVV AIDPTSSWKL SLRKSMEKYE SENTKLDVLA
WSKYQPCFLN RQLITLLSTL GVPDYAFEKK QREVVDQLNA LLTDPLEAQE ALELMSPGEN
TNILKEMLLC GYKPDAEPFL SMMLETFRAS KLLELRTKAR IFVQKGRSMM GCLDETRTLN
YGQVFVQFSG SRSERRFIVQ GKVIVAKNPC LHPGDVRVLR AVNVPDLHHM VDCVVFPQKG
TRPHPNECSG SDLDGDVYFV CWDPELIPYK QIDPMDYSPA STTKLDHEVT IEEIEEYFTN
YIVNDSLGII SNAHTAFADR EPGKAMSRPC LELAKLFSIA VDFPKTGVPA EIPQELRVKE
FPDFMEKPDK PSYQSYNVIG KLFREVKNLA PNECSIKLLT REKMKRFYDP DMEVEGFEDY
IDDAFFYKSK YDYKLGNLMD YYGVKTEAEI LSGGIMKMSR SFTKKRDAEV ISMAVRSLRK
EARSWFNEKG SELDEEIDDA YAKASAWYYV TYHHSYWGQY NEGMNRDHFL SFPWCVYDKL
IQIKKEKAAL REALDLSSLE HCFQRGFHLH
//
