ID A0A0B4D9L5_9FLAO Unreviewed; 487 AA.
AC A0A0B4D9L5;
DT 04-MAR-2015, integrated into UniProtKB/TrEMBL.
DT 04-MAR-2015, sequence version 1.
DT 24-JAN-2024, entry version 39.
DE SubName: Full=RNA polymerase sigma54 factor {ECO:0000313|EMBL:KIC63376.1};
GN ORFNames=RM51_06765 {ECO:0000313|EMBL:KIC63376.1};
OS Chryseobacterium taiwanense.
OC Bacteria; Bacteroidota; Flavobacteriia; Flavobacteriales; Weeksellaceae;
OC Chryseobacterium group; Chryseobacterium.
OX NCBI_TaxID=363331 {ECO:0000313|EMBL:KIC63376.1, ECO:0000313|Proteomes:UP000031167};
RN [1] {ECO:0000313|EMBL:KIC63376.1, ECO:0000313|Proteomes:UP000031167}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=TPW19 {ECO:0000313|EMBL:KIC63376.1,
RC ECO:0000313|Proteomes:UP000031167};
RA Tan P.W., Chan K.-G.;
RT "Genome sequencing of Chryseobacterium taiwanense TPW19.";
RL Submitted (DEC-2014) to the EMBL/GenBank/DDBJ databases.
CC -!- SIMILARITY: Belongs to the sigma-54 factor family.
CC {ECO:0000256|ARBA:ARBA00008798}.
CC -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC whole genome shotgun (WGS) entry which is preliminary data.
CC {ECO:0000313|EMBL:KIC63376.1}.
CC ---------------------------------------------------------------------------
CC Copyrighted by the UniProt Consortium, see https://www.uniprot.org/terms
CC Distributed under the Creative Commons Attribution (CC BY 4.0) License
CC ---------------------------------------------------------------------------
DR EMBL; JWTA01000005; KIC63376.1; -; Genomic_DNA.
DR RefSeq; WP_039366674.1; NZ_JWTA01000005.1.
DR AlphaFoldDB; A0A0B4D9L5; -.
DR STRING; 363331.RM51_06765; -.
DR OrthoDB; 9814402at2; -.
DR Proteomes; UP000031167; Unassembled WGS sequence.
DR GO; GO:0000428; C:DNA-directed RNA polymerase complex; IEA:UniProtKB-KW.
DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR GO; GO:0001216; F:DNA-binding transcription activator activity; IEA:InterPro.
DR GO; GO:0016779; F:nucleotidyltransferase activity; IEA:UniProtKB-KW.
DR GO; GO:0016987; F:sigma factor activity; IEA:UniProtKB-KW.
DR GO; GO:0006352; P:DNA-templated transcription initiation; IEA:InterPro.
DR Gene3D; 1.10.10.60; Homeodomain-like; 1.
DR Gene3D; 1.10.10.1330; RNA polymerase sigma-54 factor, core-binding domain; 1.
DR InterPro; IPR000394; RNA_pol_sigma_54.
DR InterPro; IPR007046; RNA_pol_sigma_54_core-bd.
DR InterPro; IPR007634; RNA_pol_sigma_54_DNA-bd.
DR InterPro; IPR038709; RpoN_core-bd_sf.
DR NCBIfam; TIGR02395; rpoN_sigma; 1.
DR PANTHER; PTHR32248; RNA POLYMERASE SIGMA-54 FACTOR; 1.
DR PANTHER; PTHR32248:SF4; RNA POLYMERASE SIGMA-54 FACTOR; 1.
DR Pfam; PF00309; Sigma54_AID; 1.
DR Pfam; PF04963; Sigma54_CBD; 1.
DR Pfam; PF04552; Sigma54_DBD; 1.
DR PIRSF; PIRSF000774; RpoN; 1.
DR PRINTS; PR00045; SIGMA54FCT.
DR PROSITE; PS00718; SIGMA54_2; 1.
DR PROSITE; PS50044; SIGMA54_3; 1.
PE 3: Inferred from homology;
KW DNA-binding {ECO:0000256|ARBA:ARBA00023125};
KW DNA-directed RNA polymerase {ECO:0000256|ARBA:ARBA00022478};
KW Nucleotidyltransferase {ECO:0000256|ARBA:ARBA00022695};
KW Sigma factor {ECO:0000256|ARBA:ARBA00023082};
KW Transcription {ECO:0000256|ARBA:ARBA00023163};
KW Transcription regulation {ECO:0000256|ARBA:ARBA00023015};
KW Transferase {ECO:0000256|ARBA:ARBA00022679}.
FT DOMAIN 107..306
FT /note="RNA polymerase sigma factor 54 core-binding"
FT /evidence="ECO:0000259|Pfam:PF04963"
FT DOMAIN 328..485
FT /note="RNA polymerase sigma factor 54 DNA-binding"
FT /evidence="ECO:0000259|Pfam:PF04552"
FT REGION 41..77
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 42..57
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 58..77
FT /note="Acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 487 AA; 55940 MW; 0748D7C27BAA865B CRC64;
MLKQHLQLKL GQKLAPQQIQ LMKLIQLHTL EFEEELEREL EENPALEIAK EDSKEEDYSS
LEDSYENEGT ESIETDFDVN EYLYDDEPSY KTASSNYSPD DEEFDNESLL TEGQSLYDYL
MEQIHLVNIT DEDVRIAEYI IGNLDTDGYL RREIKSIVDD LAFSQGIYTT KEKVEDILEN
YIQKLDPSGV GARSLQECLL LQIEKKVSSD KAISLAANIL RHQFDALTNK HYNKIIQKYD
IEEEDLKDAL DEISKLSPKV GGNFDTQTIT INQEIIPDFV IQVKDGQVIP MLNSKNAPTL
RVSEEYKDIL STYSHDKNSA EHKQAALFIK QKLDAAKWYI DAINQRQNTL LQTITAIVKF
QKDYFITGDE KSLKPMILKD IADITGFDIS TISRVVKSKY ADTPNGIVYL KDLFSDSLTN
DDGEEVSTKE IKTHLQEVIN KENKRKPLTD DALVVILKEQ GYNIARRTIA KYREQLNIPV
ARLRKEL
//