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Database: UniProt
Entry: A0A0B8T097_9SPHI
LinkDB: A0A0B8T097_9SPHI
Original site: A0A0B8T097_9SPHI 
ID   A0A0B8T097_9SPHI        Unreviewed;       181 AA.
AC   A0A0B8T097;
DT   01-APR-2015, integrated into UniProtKB/TrEMBL.
DT   01-APR-2015, sequence version 1.
DT   24-JAN-2024, entry version 36.
DE   RecName: Full=RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000716};
GN   ORFNames=DI53_2396 {ECO:0000313|EMBL:KGE13867.1};
OS   Sphingobacterium deserti.
OC   Bacteria; Bacteroidota; Sphingobacteriia; Sphingobacteriales;
OC   Sphingobacteriaceae; Sphingobacterium.
OX   NCBI_TaxID=1229276 {ECO:0000313|EMBL:KGE13867.1, ECO:0000313|Proteomes:UP000031802};
RN   [1] {ECO:0000313|Proteomes:UP000031802}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=ACCC05744 {ECO:0000313|Proteomes:UP000031802};
RA   Teng C., Zhou Z., Li X., Chen M., Lin M., Wang L., Su S., Zhang C.,
RA   Zhang W.;
RT   "Whole-Genome optical mapping and complete genome sequence of
RT   Sphingobacterium deserti sp. nov., a new spaces isolated from desert in the
RT   west of China.";
RL   Submitted (APR-2014) to the EMBL/GenBank/DDBJ databases.
RN   [2] {ECO:0000313|EMBL:KGE13867.1, ECO:0000313|Proteomes:UP000031802}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=ACCC05744 {ECO:0000313|Proteomes:UP000031802};
RX   PubMed=25830331;
RA   Teng C., Zhou Z., Molnar I., Li X., Tang R., Chen M., Wang L., Su S.,
RA   Zhang W., Lin M.;
RT   "Whole-Genome Optical Mapping and Finished Genome Sequence of
RT   Sphingobacterium deserti sp. nov., a New Species Isolated from the Western
RT   Desert of China.";
RL   PLoS ONE 10:E0122254-E0122254(2015).
CC   -!- SIMILARITY: Belongs to the sigma-70 factor family. ECF subfamily.
CC       {ECO:0000256|ARBA:ARBA00010641, ECO:0000256|RuleBase:RU000716}.
CC   -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC       whole genome shotgun (WGS) entry which is preliminary data.
CC       {ECO:0000313|EMBL:KGE13867.1}.
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DR   EMBL; JJMU01000035; KGE13867.1; -; Genomic_DNA.
DR   RefSeq; WP_037499508.1; NZ_JJMU01000035.1.
DR   AlphaFoldDB; A0A0B8T097; -.
DR   STRING; 1229276.DI53_2396; -.
DR   PATRIC; fig|1229276.3.peg.2460; -.
DR   eggNOG; COG1595; Bacteria.
DR   OrthoDB; 9780326at2; -.
DR   Proteomes; UP000031802; Unassembled WGS sequence.
DR   GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR   GO; GO:0016987; F:sigma factor activity; IEA:UniProtKB-KW.
DR   GO; GO:0006352; P:DNA-templated transcription initiation; IEA:InterPro.
DR   CDD; cd06171; Sigma70_r4; 1.
DR   Gene3D; 1.10.1740.10; -; 1.
DR   Gene3D; 1.10.10.10; Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain; 1.
DR   InterPro; IPR039425; RNA_pol_sigma-70-like.
DR   InterPro; IPR014284; RNA_pol_sigma-70_dom.
DR   InterPro; IPR000838; RNA_pol_sigma70_ECF_CS.
DR   InterPro; IPR007627; RNA_pol_sigma70_r2.
DR   InterPro; IPR013249; RNA_pol_sigma70_r4_t2.
DR   InterPro; IPR013325; RNA_pol_sigma_r2.
DR   InterPro; IPR013324; RNA_pol_sigma_r3/r4-like.
DR   InterPro; IPR036388; WH-like_DNA-bd_sf.
DR   NCBIfam; TIGR02937; sigma70-ECF; 1.
DR   PANTHER; PTHR43133; RNA POLYMERASE ECF-TYPE SIGMA FACTO; 1.
DR   PANTHER; PTHR43133:SF46; RNA POLYMERASE SIGMA FACTOR SIGY; 1.
DR   Pfam; PF04542; Sigma70_r2; 1.
DR   Pfam; PF08281; Sigma70_r4_2; 1.
DR   SUPFAM; SSF88946; Sigma2 domain of RNA polymerase sigma factors; 1.
DR   SUPFAM; SSF88659; Sigma3 and sigma4 domains of RNA polymerase sigma factors; 1.
DR   PROSITE; PS01063; SIGMA70_ECF; 1.
PE   3: Inferred from homology;
KW   DNA-binding {ECO:0000256|RuleBase:RU000716};
KW   Reference proteome {ECO:0000313|Proteomes:UP000031802};
KW   Sigma factor {ECO:0000256|RuleBase:RU000716};
KW   Transcription {ECO:0000256|RuleBase:RU000716};
KW   Transcription regulation {ECO:0000256|RuleBase:RU000716}.
FT   DOMAIN          23..89
FT                   /note="RNA polymerase sigma-70 region 2"
FT                   /evidence="ECO:0000259|Pfam:PF04542"
FT   DOMAIN          121..173
FT                   /note="RNA polymerase sigma factor 70 region 4 type 2"
FT                   /evidence="ECO:0000259|Pfam:PF08281"
SQ   SEQUENCE   181 AA;  21323 MW;  4E09B036EC14A0C4 CRC64;
     MEDALIISKF ADERTREEAF GYLLQKYQQK IYWHVRRMVI DHDDADDVVQ DVFIKVWRNL
     EKFREDSQLY TWLYRIATNE CITFLNKKKQ KQSLSLDDDS SAYLADTLAD GSYFNGDKAQ
     MKLQQALLTL PEKQRLVFNM KYFEDLKYDE ISEILGTSVG ALKASYHLAV KKIENFFSSN
     D
//
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