ID A0A0C3NFQ8_9PORP Unreviewed; 366 AA.
AC A0A0C3NFQ8;
DT 01-APR-2015, integrated into UniProtKB/TrEMBL.
DT 01-APR-2015, sequence version 1.
DT 24-JAN-2024, entry version 34.
DE RecName: Full=Ribosome-binding ATPase YchF {ECO:0000256|HAMAP-Rule:MF_00944};
GN Name=ychF {ECO:0000256|HAMAP-Rule:MF_00944,
GN ECO:0000313|EMBL:KIO44962.1};
GN ORFNames=BA92_08065 {ECO:0000313|EMBL:KIO44962.1}, DMB45_12400
GN {ECO:0000313|EMBL:PXZ43181.1};
OS Sanguibacteroides justesenii.
OC Bacteria; Bacteroidota; Bacteroidia; Bacteroidales; Porphyromonadaceae;
OC Sanguibacteroides.
OX NCBI_TaxID=1547597 {ECO:0000313|EMBL:KIO44962.1, ECO:0000313|Proteomes:UP000031980};
RN [1] {ECO:0000313|EMBL:KIO44962.1, ECO:0000313|Proteomes:UP000031980}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=OUH 308042 {ECO:0000313|EMBL:KIO44962.1,
RC ECO:0000313|Proteomes:UP000031980};
RA Sydenham T.V., Hasman H., Justensen U.S.;
RT "Porphyromonadaceae bacterium OUH 308042 = ATCC BAA-2681 = DSM 28342 draft
RT genome.";
RL Submitted (JUL-2014) to the EMBL/GenBank/DDBJ databases.
RN [2] {ECO:0000313|EMBL:PXZ43181.1, ECO:0000313|Proteomes:UP000248308}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=OUH 969102 {ECO:0000313|EMBL:PXZ43181.1,
RC ECO:0000313|Proteomes:UP000248308};
RX PubMed=25814588;
RA Sydenham T.V., Hasman H., Justesen U.S.;
RT "Draft Genome Sequences of Sanguibacteroides justesenii, gen. nov., sp.
RT nov., Strains OUH 308042T (= ATCC BAA-2681T) and OUH 334697 (= ATCC BAA-
RT 2682), Isolated from Blood Cultures from Two Different Patients.";
RL Genome Announc. 3:e00005-15(2015).
RN [3] {ECO:0000313|EMBL:PXZ43181.1}
RP NUCLEOTIDE SEQUENCE.
RC STRAIN=OUH 969102 {ECO:0000313|EMBL:PXZ43181.1};
RA Lanie J.A., Ng W.-L., Kazmierczak K.M., Andrzejewski T.M., Davidsen T.M.,
RA Wayne K.J., Tettelin H., Glass J.I., Rusch D., Podicherti R., Tsui H.-C.T.,
RA Winkler M.E.;
RL Submitted (MAY-2018) to the EMBL/GenBank/DDBJ databases.
CC -!- FUNCTION: ATPase that binds to both the 70S ribosome and the 50S
CC ribosomal subunit in a nucleotide-independent manner.
CC {ECO:0000256|HAMAP-Rule:MF_00944}.
CC -!- SIMILARITY: Belongs to the TRAFAC class OBG-HflX-like GTPase
CC superfamily. OBG GTPase family. YchF/OLA1 subfamily.
CC {ECO:0000256|HAMAP-Rule:MF_00944}.
CC -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC whole genome shotgun (WGS) entry which is preliminary data.
CC {ECO:0000313|EMBL:KIO44962.1}.
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DR EMBL; JPIU01000038; KIO44962.1; -; Genomic_DNA.
DR EMBL; QJPL01000007; PXZ43181.1; -; Genomic_DNA.
DR RefSeq; WP_041504355.1; NZ_QJPL01000007.1.
DR AlphaFoldDB; A0A0C3NFQ8; -.
DR OrthoDB; 9807318at2; -.
DR Proteomes; UP000031980; Unassembled WGS sequence.
DR Proteomes; UP000248308; Unassembled WGS sequence.
DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-UniRule.
DR GO; GO:0016887; F:ATP hydrolysis activity; IEA:UniProtKB-UniRule.
DR GO; GO:0005525; F:GTP binding; IEA:InterPro.
DR GO; GO:0043023; F:ribosomal large subunit binding; IEA:UniProtKB-UniRule.
DR CDD; cd04867; TGS_YchF_OLA1; 1.
DR CDD; cd01900; YchF; 1.
DR Gene3D; 3.10.20.30; -; 1.
DR Gene3D; 3.40.50.300; P-loop containing nucleotide triphosphate hydrolases; 1.
DR Gene3D; 1.10.150.300; TGS-like domain; 1.
DR HAMAP; MF_00944; YchF_OLA1_ATPase; 1.
DR InterPro; IPR004396; ATPase_YchF/OLA1.
DR InterPro; IPR012675; Beta-grasp_dom_sf.
DR InterPro; IPR031167; G_OBG.
DR InterPro; IPR006073; GTP-bd.
DR InterPro; IPR027417; P-loop_NTPase.
DR InterPro; IPR012676; TGS-like.
DR InterPro; IPR023192; TGS-like_dom_sf.
DR InterPro; IPR013029; YchF_C.
DR InterPro; IPR041706; YchF_N.
DR NCBIfam; TIGR00092; redox-regulated ATPase YchF; 1.
DR PANTHER; PTHR23305; OBG GTPASE FAMILY; 1.
DR PANTHER; PTHR23305:SF18; OBG-TYPE G DOMAIN-CONTAINING PROTEIN; 1.
DR Pfam; PF01926; MMR_HSR1; 1.
DR Pfam; PF06071; YchF-GTPase_C; 1.
DR PIRSF; PIRSF006641; CHP00092; 1.
DR PRINTS; PR00326; GTP1OBG.
DR SUPFAM; SSF52540; P-loop containing nucleoside triphosphate hydrolases; 1.
DR SUPFAM; SSF81271; TGS-like; 1.
DR PROSITE; PS51710; G_OBG; 1.
PE 3: Inferred from homology;
KW ATP-binding {ECO:0000256|ARBA:ARBA00022840, ECO:0000256|HAMAP-
KW Rule:MF_00944}; Magnesium {ECO:0000256|ARBA:ARBA00022842};
KW Nucleotide-binding {ECO:0000256|ARBA:ARBA00022741, ECO:0000256|HAMAP-
KW Rule:MF_00944}; Reference proteome {ECO:0000313|Proteomes:UP000031980}.
FT DOMAIN 3..258
FT /note="OBG-type G"
FT /evidence="ECO:0000259|PROSITE:PS51710"
FT BINDING 12..17
FT /ligand="ATP"
FT /ligand_id="ChEBI:CHEBI:30616"
FT /evidence="ECO:0000256|HAMAP-Rule:MF_00944"
SQ SEQUENCE 366 AA; 40585 MW; B77FC893EE3F1446 CRC64;
MSLQCGIVGL PNVGKSTLFN CLSNAKAQSA NFPFCTIEPN VGVITVPDKR LNKLVELVQP
QNVVPAVVEI VDIAGLVKGA SKGEGLGNKF LSNIRETDAI IHVLRCFDDD NIVHVDGSVD
PVRDKEIIDT ELQLKDLETV ENRLLKEEKR AKTGGDAYAK RLVEVLYLYK EALERGESAR
SVKLTDLQQE VAKELMLLTN KPILYVCNVD EVSVVKGNKY VDAVREAVKN EGAEVLVIGA
AIEADIAELE TYEEKQMFLE DLGLEEAGVN KLIRTAYKLL NLRTYFTAGP KEVRAWTFKN
GMKAPQTAGI IHTDFEKGFI RAEVIKYEDF IAFGSEAKCK EAGKMSVEGK DYVVQDGDMM
NFRFNV
//
