ID A0A0D0LCN6_VARPD Unreviewed; 121 AA.
AC A0A0D0LCN6;
DT 29-APR-2015, integrated into UniProtKB/TrEMBL.
DT 29-APR-2015, sequence version 1.
DT 27-MAR-2024, entry version 52.
DE RecName: Full=Small ribosomal subunit protein uS13 {ECO:0000256|ARBA:ARBA00035166, ECO:0000256|HAMAP-Rule:MF_01315};
GN Name=rpsM {ECO:0000256|HAMAP-Rule:MF_01315,
GN ECO:0000313|EMBL:KLN54551.1};
GN ORFNames=A3K87_12970 {ECO:0000313|EMBL:OAK64729.1}, GFK26_08650
GN {ECO:0000313|EMBL:QFZ82823.1}, GOQ09_24790
GN {ECO:0000313|EMBL:QGW84593.1}, JF629_12520
GN {ECO:0000313|EMBL:MBW8716604.1}, RT97_03990
GN {ECO:0000313|EMBL:KIQ35932.1}, VPARA_41930
GN {ECO:0000313|EMBL:KLN54551.1};
OS Variovorax paradoxus.
OC Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
OC Comamonadaceae; Variovorax.
OX NCBI_TaxID=34073 {ECO:0000313|EMBL:KIQ35932.1, ECO:0000313|Proteomes:UP000032067};
RN [1] {ECO:0000313|EMBL:KIQ35932.1, ECO:0000313|Proteomes:UP000032067}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=MEDvA23 {ECO:0000313|EMBL:KIQ35932.1,
RC ECO:0000313|Proteomes:UP000032067};
RA Perisin M.A., Vetter M., Gilbert J.A., Bergelson J.;
RT "16Stimator: statistical estimation of ribosomal gene copy numbers from
RT draft genome assemblies.";
RL Submitted (DEC-2014) to the EMBL/GenBank/DDBJ databases.
RN [2] {ECO:0000313|EMBL:KLN54551.1, ECO:0000313|Proteomes:UP000035170}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=TBEA6 {ECO:0000313|EMBL:KLN54551.1,
RC ECO:0000313|Proteomes:UP000035170};
RA Poehlein A., Schuldes J., Wuebbeler J.H., Hiessl S., Steinbuechel A.,
RA Daniel R.;
RT "Genome sequence of Variovorax paradoxus TBEA6.";
RL Submitted (MAR-2015) to the EMBL/GenBank/DDBJ databases.
RN [3] {ECO:0000313|EMBL:OAK64729.1, ECO:0000313|Proteomes:UP000077852}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=KB5 {ECO:0000313|EMBL:OAK64729.1,
RC ECO:0000313|Proteomes:UP000077852};
RA Jeong H., Hong C.E., Jo S.H., Park J.M.;
RT "Genome sequence of Variovorax paradoxus KB5.";
RL Submitted (MAR-2016) to the EMBL/GenBank/DDBJ databases.
RN [4] {ECO:0000313|EMBL:QFZ82823.1, ECO:0000313|Proteomes:UP000326780}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=5C-2 {ECO:0000313|EMBL:QFZ82823.1,
RC ECO:0000313|Proteomes:UP000326780};
RA Gogoleva N.E., Balkin A.S.;
RT "Complete genome sequence of Variovorax paradoxus 5C-2.";
RL Submitted (OCT-2019) to the EMBL/GenBank/DDBJ databases.
RN [5] {ECO:0000313|EMBL:QGW84593.1, ECO:0000313|Proteomes:UP000425817}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=CSUSB {ECO:0000313|EMBL:QGW84593.1,
RC ECO:0000313|Proteomes:UP000425817};
RA Ne Ville C.J., Enright D., Hernandez I., Dodsworth J., Orwin P.M.;
RT "Hybrid Genome Assemblies of two High G+C Isolates from Undergraduate
RT Microbiology Courses.";
RL Submitted (DEC-2019) to the EMBL/GenBank/DDBJ databases.
RN [6] {ECO:0000313|EMBL:MBW8716604.1}
RP NUCLEOTIDE SEQUENCE.
RC STRAIN=YM_68_14 {ECO:0000313|EMBL:MBW8716604.1};
RA Starr E.P., Shi S., Blazewicz S.J., Koch B.J., Probst A.J., Hungate B.A.,
RA Pett-Ridge J., Firestone M.K., Banfield J.F.;
RT "Stable isotope informed genome-resolved metagenomics uncovers potential
RT trophic interactions in rhizosphere soil.";
RL Submitted (JUN-2020) to the EMBL/GenBank/DDBJ databases.
CC -!- FUNCTION: Located at the top of the head of the 30S subunit, it
CC contacts several helices of the 16S rRNA. In the 70S ribosome it
CC contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit
CC (bridge B1b), connecting the 2 subunits; these bridges are implicated
CC in subunit movement. Contacts the tRNAs in the A and P-sites.
CC {ECO:0000256|HAMAP-Rule:MF_01315}.
CC -!- SUBUNIT: Part of the 30S ribosomal subunit. Forms a loose heterodimer
CC with protein S19. Forms two bridges to the 50S subunit in the 70S
CC ribosome. {ECO:0000256|HAMAP-Rule:MF_01315}.
CC -!- SIMILARITY: Belongs to the universal ribosomal protein uS13 family.
CC {ECO:0000256|ARBA:ARBA00008080, ECO:0000256|HAMAP-Rule:MF_01315,
CC ECO:0000256|RuleBase:RU003830}.
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DR EMBL; JXQQ01000008; KIQ35932.1; -; Genomic_DNA.
DR EMBL; JZWI01000022; KLN54551.1; -; Genomic_DNA.
DR EMBL; JAEKMD010000282; MBW8716604.1; -; Genomic_DNA.
DR EMBL; LVHG01000036; OAK64729.1; -; Genomic_DNA.
DR EMBL; CP045644; QFZ82823.1; -; Genomic_DNA.
DR EMBL; CP046622; QGW84593.1; -; Genomic_DNA.
DR RefSeq; WP_013544105.1; NZ_LVHG01000036.1.
DR GeneID; 82272237; -.
DR PATRIC; fig|34073.19.peg.4294; -.
DR eggNOG; COG0099; Bacteria.
DR OMA; MNVKRLM; -.
DR OrthoDB; 9803610at2; -.
DR Proteomes; UP000032067; Unassembled WGS sequence.
DR Proteomes; UP000035170; Unassembled WGS sequence.
DR Proteomes; UP000077852; Unassembled WGS sequence.
DR Proteomes; UP000326780; Chromosome.
DR Proteomes; UP000425817; Chromosome.
DR Proteomes; UP000767082; Unassembled WGS sequence.
DR GO; GO:1990904; C:ribonucleoprotein complex; IEA:UniProtKB-KW.
DR GO; GO:0005840; C:ribosome; IEA:UniProtKB-KW.
DR GO; GO:0019843; F:rRNA binding; IEA:UniProtKB-UniRule.
DR GO; GO:0003735; F:structural constituent of ribosome; IEA:InterPro.
DR GO; GO:0000049; F:tRNA binding; IEA:UniProtKB-UniRule.
DR GO; GO:0006412; P:translation; IEA:UniProtKB-UniRule.
DR Gene3D; 1.10.8.50; -; 1.
DR Gene3D; 4.10.910.10; 30s ribosomal protein s13, domain 2; 1.
DR HAMAP; MF_01315; Ribosomal_S13_S18; 1.
DR InterPro; IPR027437; Rbsml_uS13_C.
DR InterPro; IPR001892; Ribosomal_uS13.
DR InterPro; IPR010979; Ribosomal_uS13-like_H2TH.
DR InterPro; IPR019980; Ribosomal_uS13_bac-type.
DR InterPro; IPR018269; Ribosomal_uS13_CS.
DR NCBIfam; TIGR03631; uS13_bact; 1.
DR PANTHER; PTHR10871; 30S RIBOSOMAL PROTEIN S13/40S RIBOSOMAL PROTEIN S18; 1.
DR PANTHER; PTHR10871:SF1; 37S RIBOSOMAL PROTEIN SWS2, MITOCHONDRIAL; 1.
DR Pfam; PF00416; Ribosomal_S13; 2.
DR PIRSF; PIRSF002134; Ribosomal_S13; 1.
DR SUPFAM; SSF46946; S13-like H2TH domain; 1.
DR PROSITE; PS00646; RIBOSOMAL_S13_1; 1.
DR PROSITE; PS50159; RIBOSOMAL_S13_2; 1.
PE 3: Inferred from homology;
KW Reference proteome {ECO:0000313|Proteomes:UP000035170};
KW Ribonucleoprotein {ECO:0000256|ARBA:ARBA00023274, ECO:0000256|HAMAP-
KW Rule:MF_01315};
KW Ribosomal protein {ECO:0000256|ARBA:ARBA00022980, ECO:0000256|HAMAP-
KW Rule:MF_01315};
KW RNA-binding {ECO:0000256|ARBA:ARBA00022884, ECO:0000256|HAMAP-
KW Rule:MF_01315};
KW rRNA-binding {ECO:0000256|ARBA:ARBA00022730, ECO:0000256|HAMAP-
KW Rule:MF_01315}; tRNA-binding {ECO:0000256|HAMAP-Rule:MF_01315}.
FT REGION 93..121
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 121 AA; 13800 MW; D6F13D8E1F00403C CRC64;
MARIAGINIP PHKHAEIGLT AIFGIGRTRA RQICEASGIE YSKKIKDLTD ADLEKIRDQI
ALFTIEGDLR RETTMNIKRL MDIGCYRGFR HRRGLPMRGQ RTRTNARTRK GPRKAAQSLK
K
//
