ID A0A0D0QCB6_9RHOB Unreviewed; 371 AA.
AC A0A0D0QCB6;
DT 29-APR-2015, integrated into UniProtKB/TrEMBL.
DT 29-APR-2015, sequence version 1.
DT 24-JAN-2024, entry version 30.
DE RecName: Full=YkuD domain-containing protein {ECO:0008006|Google:ProtNLM};
GN ORFNames=Wenmar_01537 {ECO:0000313|EMBL:KIQ69967.1};
OS Wenxinia marina DSM 24838.
OC Bacteria; Pseudomonadota; Alphaproteobacteria; Rhodobacterales;
OC Roseobacteraceae; Wenxinia.
OX NCBI_TaxID=1123501 {ECO:0000313|EMBL:KIQ69967.1, ECO:0000313|Proteomes:UP000035100};
RN [1] {ECO:0000313|EMBL:KIQ69967.1, ECO:0000313|Proteomes:UP000035100}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=DSM 24838 {ECO:0000313|EMBL:KIQ69967.1,
RC ECO:0000313|Proteomes:UP000035100};
RA Fiebig A., Goeker M., Klenk H.-P.P.;
RL Submitted (JAN-2013) to the EMBL/GenBank/DDBJ databases.
CC -!- PATHWAY: Cell wall biogenesis; peptidoglycan biosynthesis.
CC {ECO:0000256|ARBA:ARBA00004752}.
CC -!- SIMILARITY: Belongs to the YkuD family.
CC {ECO:0000256|ARBA:ARBA00005992}.
CC -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC whole genome shotgun (WGS) entry which is preliminary data.
CC {ECO:0000313|EMBL:KIQ69967.1}.
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DR EMBL; AONG01000008; KIQ69967.1; -; Genomic_DNA.
DR RefSeq; WP_018301099.1; NZ_KN848372.1.
DR AlphaFoldDB; A0A0D0QCB6; -.
DR STRING; 1123501.Wenmar_01537; -.
DR PATRIC; fig|1123501.6.peg.1627; -.
DR eggNOG; COG1376; Bacteria.
DR OrthoDB; 9787225at2; -.
DR UniPathway; UPA00219; -.
DR Proteomes; UP000035100; Unassembled WGS sequence.
DR GO; GO:0004180; F:carboxypeptidase activity; IEA:UniProt.
DR GO; GO:0016740; F:transferase activity; IEA:UniProtKB-KW.
DR GO; GO:0009252; P:peptidoglycan biosynthetic process; IEA:UniProtKB-UniPathway.
DR CDD; cd16913; YkuD_like; 1.
DR Gene3D; 2.40.440.10; L,D-transpeptidase catalytic domain-like; 1.
DR Gene3D; 1.10.101.10; PGBD-like superfamily/PGBD; 1.
DR InterPro; IPR005490; LD_TPept_cat_dom.
DR InterPro; IPR002477; Peptidoglycan-bd-like.
DR InterPro; IPR036365; PGBD-like_sf.
DR InterPro; IPR036366; PGBDSf.
DR InterPro; IPR038063; Transpep_catalytic_dom.
DR PANTHER; PTHR30582:SF30; BLR4375 PROTEIN; 1.
DR PANTHER; PTHR30582; L,D-TRANSPEPTIDASE; 1.
DR Pfam; PF01471; PG_binding_1; 1.
DR Pfam; PF03734; YkuD; 1.
DR SUPFAM; SSF141523; L,D-transpeptidase catalytic domain-like; 1.
DR SUPFAM; SSF47090; PGBD-like; 1.
PE 3: Inferred from homology;
KW Reference proteome {ECO:0000313|Proteomes:UP000035100};
KW Signal {ECO:0000256|SAM:SignalP};
KW Transferase {ECO:0000256|ARBA:ARBA00022679}.
FT SIGNAL 1..21
FT /evidence="ECO:0000256|SAM:SignalP"
FT CHAIN 22..371
FT /note="YkuD domain-containing protein"
FT /evidence="ECO:0000256|SAM:SignalP"
FT /id="PRO_5002219121"
FT DOMAIN 99..150
FT /note="Peptidoglycan binding-like"
FT /evidence="ECO:0000259|Pfam:PF01471"
FT DOMAIN 239..368
FT /note="L,D-transpeptidase catalytic"
FT /evidence="ECO:0000259|Pfam:PF03734"
FT REGION 37..74
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 371 AA; 38617 MW; 746E092A9B285680 CRC64;
MRPFPLILLA LAAHGAAAQN AAPTLDEILD AFERAPTSDL APAPAPAAAP PQAPEVVAAP
QTAPAAPEAA TDRMPTPAEI ESVTYAGGPL PEGRSALTVK LQILLDRSGI SPGVIDGWRG
GMSESAIAAF ETRAGLPVDG ILDPEVWAQL GGDEPGAVLA SYTVVPADLE NLSGELPSDY
ALLAQLPHLG HERASERIAE FFHMTEEFLI GLNPGATFQP GETLTVAALG AHAAEPVAAI
VIDKTTRRLT GYDAAGNLVV NYPVTVGSTD TPSPSGHVTV ERIALMPEYS YNPENFIQGD
NMSRLTLPPG PNGPVGSVWI ALSKPSYGIH GTPEPSSLFR SQSHGCVRLT NWDAEELAGL
VTPGVSVVFQ D
//
