ID A0A0D1YIF4_9EURO Unreviewed; 1046 AA.
AC A0A0D1YIF4;
DT 29-APR-2015, integrated into UniProtKB/TrEMBL.
DT 29-APR-2015, sequence version 1.
DT 24-JAN-2024, entry version 33.
DE RecName: Full=Rad4 beta-hairpin domain-containing protein {ECO:0008006|Google:ProtNLM};
GN ORFNames=PV08_07500 {ECO:0000313|EMBL:KIW14716.1};
OS Exophiala spinifera.
OC Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Eurotiomycetes;
OC Chaetothyriomycetidae; Chaetothyriales; Herpotrichiellaceae; Exophiala.
OX NCBI_TaxID=91928 {ECO:0000313|EMBL:KIW14716.1, ECO:0000313|Proteomes:UP000053328};
RN [1] {ECO:0000313|EMBL:KIW14716.1, ECO:0000313|Proteomes:UP000053328}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=CBS 89968 {ECO:0000313|EMBL:KIW14716.1,
RC ECO:0000313|Proteomes:UP000053328};
RG The Broad Institute Genomics Platform;
RA Cuomo C., de Hoog S., Gorbushina A., Stielow B., Teixiera M.,
RA Abouelleil A., Chapman S.B., Priest M., Young S.K., Wortman J., Nusbaum C.,
RA Birren B.;
RT "The Genome Sequence of Exophiala spinifera CBS89968.";
RL Submitted (JAN-2015) to the EMBL/GenBank/DDBJ databases.
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|ARBA:ARBA00004123}.
CC -!- SIMILARITY: Belongs to the XPC family. {ECO:0000256|ARBA:ARBA00009525}.
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DR EMBL; KN847496; KIW14716.1; -; Genomic_DNA.
DR RefSeq; XP_016234932.1; XM_016381830.1.
DR AlphaFoldDB; A0A0D1YIF4; -.
DR STRING; 91928.A0A0D1YIF4; -.
DR GeneID; 27334583; -.
DR VEuPathDB; FungiDB:PV08_07500; -.
DR HOGENOM; CLU_003639_1_1_1; -.
DR OrthoDB; 181129at2759; -.
DR Proteomes; UP000053328; Unassembled WGS sequence.
DR GO; GO:0005634; C:nucleus; IEA:InterPro.
DR GO; GO:0003684; F:damaged DNA binding; IEA:InterPro.
DR GO; GO:0006289; P:nucleotide-excision repair; IEA:InterPro.
DR Gene3D; 2.20.20.110; Rad4, beta-hairpin domain BHD1; 1.
DR Gene3D; 3.30.60.290; Rad4, beta-hairpin domain BHD2; 1.
DR Gene3D; 3.30.70.2460; Rad4, beta-hairpin domain BHD3; 1.
DR Gene3D; 3.90.260.10; Transglutaminase-like; 1.
DR InterPro; IPR018327; BHD_2.
DR InterPro; IPR004583; DNA_repair_Rad4.
DR InterPro; IPR038765; Papain-like_cys_pep_sf.
DR InterPro; IPR018325; Rad4/PNGase_transGLS-fold.
DR InterPro; IPR018326; Rad4_beta-hairpin_dom1.
DR InterPro; IPR018328; Rad4_beta-hairpin_dom3.
DR InterPro; IPR042488; Rad4_BHD3_sf.
DR InterPro; IPR036985; Transglutaminase-like_sf.
DR PANTHER; PTHR12135:SF0; DNA REPAIR PROTEIN COMPLEMENTING XP-C CELLS; 1.
DR PANTHER; PTHR12135; DNA REPAIR PROTEIN XP-C / RAD4; 1.
DR Pfam; PF10403; BHD_1; 1.
DR Pfam; PF10404; BHD_2; 1.
DR Pfam; PF10405; BHD_3; 1.
DR Pfam; PF03835; Rad4; 1.
DR SMART; SM01030; BHD_1; 1.
DR SMART; SM01031; BHD_2; 1.
DR SMART; SM01032; BHD_3; 1.
DR SUPFAM; SSF54001; Cysteine proteinases; 1.
PE 3: Inferred from homology;
KW DNA damage {ECO:0000256|ARBA:ARBA00022763};
KW DNA repair {ECO:0000256|ARBA:ARBA00023204};
KW Nucleus {ECO:0000256|ARBA:ARBA00023242};
KW Reference proteome {ECO:0000313|Proteomes:UP000053328}.
FT DOMAIN 482..540
FT /note="Rad4 beta-hairpin"
FT /evidence="ECO:0000259|SMART:SM01030"
FT DOMAIN 542..609
FT /note="Rad4 beta-hairpin"
FT /evidence="ECO:0000259|SMART:SM01031"
FT DOMAIN 616..690
FT /note="Rad4 beta-hairpin"
FT /evidence="ECO:0000259|SMART:SM01032"
FT REGION 1..77
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 106..163
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 559..593
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 729..775
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 810..1046
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 1..18
FT /note="Basic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 43..66
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 106..124
FT /note="Acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 125..163
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 559..580
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 738..754
FT /note="Acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 816..830
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 882..898
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 949..982
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 1012..1027
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 1046 AA; 116614 MW; 08BA2BFE982A74B1 CRC64;
MPPRKRQTAS RTTTRKTRQS ARHNSDASDD GIPAVYGEML AEAAREEQTR SLSSRPSKRR
KLSEEPSSGI GLDFNLFGPD DNVADANVAA NNVPENLQQT VYDEFEGSEE SDVEFEDVDL
DAPPEEPDVG AHSRQSRFEL DLSKTNLDAP RRTTPRRKPV SPAERKLRLE VHKAHLLCLL
GHLSCRNRWC ESPSVQSILK PLVPKKVTSL LHVDDSKPQY QRNHSFMKGI EEVCALWKLQ
WEVTVRGMRR AHWKDDVDVL KESDDAEDLI DFDDFRAAAH SRSGSRDLGA QLCCALLRSI
AVDARLVCSL QVLPFSGVAK GQSTMKPKPQ YYHAPAQDYT SMGGTTTIMQ SERSISPKKK
KKIVDSPYPI FWVEAYSPSI ATWIPLDPLV RGTINKPKRG FEPPASDQLN NMTYVIAFED
DGSAKDVTRR YTEWYHAKTR KQRVESTKGG EEWWDRTMRT FRKPFEEDRD VIEDVFLNKR
TQNEPMPRNV QDFKGHPVYV LERHLRMNEV IHPKHEVGKV SAGPSKNAKL ESVYRRRDVH
LCRTADAWYR RGKDVNEGEQ PLKRVLSKKR HNHPLAEPGE DLDDGADADG RQEGAPLYAD
YQTSFYQPPP VVDGKVPKNG YGNLDVYVPT MIPAGAVHIR HPLAAQSARV LGIDYADAVT
GFEFKGRQGT AVIDGVVVSL DMTSAVISVI EGLESQASDE AEAERSRVVL GLWKRWLQAL
RVRERVHRDY GNSDEESGDK ADEYDDEDYE EKTEDDGGGF VPEAAEQGQP SAKFPGADTE
AVLARLKPID QLLPPEVIHQ DIVIVRSPHK MASPWSEERG NQSRSNAISL SRGEYEGDDG
DEGQGGGFIV EDEDGANGTE SLFEDDDANS GGGFILEDEG ELNEGTNTNP QMTLGQPQLH
KRRPTPDANA SENGGGFLHG DEKDTDPTLP YHVVSMDSRQ EIHRKTEFQQ DTTGSQQESP
VSPSGTATAD AADPSMNNTT AEPLREKPEA ETEPKALPNP EILDPEVGTK RIETDSNNSP
LSQTSLLSHD PDEEDAEPDW IVDSLG
//