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Database: UniProt
Entry: A0A0D1YIF4_9EURO
LinkDB: A0A0D1YIF4_9EURO
Original site: A0A0D1YIF4_9EURO 
ID   A0A0D1YIF4_9EURO        Unreviewed;      1046 AA.
AC   A0A0D1YIF4;
DT   29-APR-2015, integrated into UniProtKB/TrEMBL.
DT   29-APR-2015, sequence version 1.
DT   24-JAN-2024, entry version 33.
DE   RecName: Full=Rad4 beta-hairpin domain-containing protein {ECO:0008006|Google:ProtNLM};
GN   ORFNames=PV08_07500 {ECO:0000313|EMBL:KIW14716.1};
OS   Exophiala spinifera.
OC   Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Eurotiomycetes;
OC   Chaetothyriomycetidae; Chaetothyriales; Herpotrichiellaceae; Exophiala.
OX   NCBI_TaxID=91928 {ECO:0000313|EMBL:KIW14716.1, ECO:0000313|Proteomes:UP000053328};
RN   [1] {ECO:0000313|EMBL:KIW14716.1, ECO:0000313|Proteomes:UP000053328}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=CBS 89968 {ECO:0000313|EMBL:KIW14716.1,
RC   ECO:0000313|Proteomes:UP000053328};
RG   The Broad Institute Genomics Platform;
RA   Cuomo C., de Hoog S., Gorbushina A., Stielow B., Teixiera M.,
RA   Abouelleil A., Chapman S.B., Priest M., Young S.K., Wortman J., Nusbaum C.,
RA   Birren B.;
RT   "The Genome Sequence of Exophiala spinifera CBS89968.";
RL   Submitted (JAN-2015) to the EMBL/GenBank/DDBJ databases.
CC   -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|ARBA:ARBA00004123}.
CC   -!- SIMILARITY: Belongs to the XPC family. {ECO:0000256|ARBA:ARBA00009525}.
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DR   EMBL; KN847496; KIW14716.1; -; Genomic_DNA.
DR   RefSeq; XP_016234932.1; XM_016381830.1.
DR   AlphaFoldDB; A0A0D1YIF4; -.
DR   STRING; 91928.A0A0D1YIF4; -.
DR   GeneID; 27334583; -.
DR   VEuPathDB; FungiDB:PV08_07500; -.
DR   HOGENOM; CLU_003639_1_1_1; -.
DR   OrthoDB; 181129at2759; -.
DR   Proteomes; UP000053328; Unassembled WGS sequence.
DR   GO; GO:0005634; C:nucleus; IEA:InterPro.
DR   GO; GO:0003684; F:damaged DNA binding; IEA:InterPro.
DR   GO; GO:0006289; P:nucleotide-excision repair; IEA:InterPro.
DR   Gene3D; 2.20.20.110; Rad4, beta-hairpin domain BHD1; 1.
DR   Gene3D; 3.30.60.290; Rad4, beta-hairpin domain BHD2; 1.
DR   Gene3D; 3.30.70.2460; Rad4, beta-hairpin domain BHD3; 1.
DR   Gene3D; 3.90.260.10; Transglutaminase-like; 1.
DR   InterPro; IPR018327; BHD_2.
DR   InterPro; IPR004583; DNA_repair_Rad4.
DR   InterPro; IPR038765; Papain-like_cys_pep_sf.
DR   InterPro; IPR018325; Rad4/PNGase_transGLS-fold.
DR   InterPro; IPR018326; Rad4_beta-hairpin_dom1.
DR   InterPro; IPR018328; Rad4_beta-hairpin_dom3.
DR   InterPro; IPR042488; Rad4_BHD3_sf.
DR   InterPro; IPR036985; Transglutaminase-like_sf.
DR   PANTHER; PTHR12135:SF0; DNA REPAIR PROTEIN COMPLEMENTING XP-C CELLS; 1.
DR   PANTHER; PTHR12135; DNA REPAIR PROTEIN XP-C / RAD4; 1.
DR   Pfam; PF10403; BHD_1; 1.
DR   Pfam; PF10404; BHD_2; 1.
DR   Pfam; PF10405; BHD_3; 1.
DR   Pfam; PF03835; Rad4; 1.
DR   SMART; SM01030; BHD_1; 1.
DR   SMART; SM01031; BHD_2; 1.
DR   SMART; SM01032; BHD_3; 1.
DR   SUPFAM; SSF54001; Cysteine proteinases; 1.
PE   3: Inferred from homology;
KW   DNA damage {ECO:0000256|ARBA:ARBA00022763};
KW   DNA repair {ECO:0000256|ARBA:ARBA00023204};
KW   Nucleus {ECO:0000256|ARBA:ARBA00023242};
KW   Reference proteome {ECO:0000313|Proteomes:UP000053328}.
FT   DOMAIN          482..540
FT                   /note="Rad4 beta-hairpin"
FT                   /evidence="ECO:0000259|SMART:SM01030"
FT   DOMAIN          542..609
FT                   /note="Rad4 beta-hairpin"
FT                   /evidence="ECO:0000259|SMART:SM01031"
FT   DOMAIN          616..690
FT                   /note="Rad4 beta-hairpin"
FT                   /evidence="ECO:0000259|SMART:SM01032"
FT   REGION          1..77
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   REGION          106..163
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   REGION          559..593
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   REGION          729..775
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   REGION          810..1046
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        1..18
FT                   /note="Basic residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        43..66
FT                   /note="Basic and acidic residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        106..124
FT                   /note="Acidic residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        125..163
FT                   /note="Basic and acidic residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        559..580
FT                   /note="Basic and acidic residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        738..754
FT                   /note="Acidic residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        816..830
FT                   /note="Polar residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        882..898
FT                   /note="Polar residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        949..982
FT                   /note="Polar residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        1012..1027
FT                   /note="Polar residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ   SEQUENCE   1046 AA;  116614 MW;  08BA2BFE982A74B1 CRC64;
     MPPRKRQTAS RTTTRKTRQS ARHNSDASDD GIPAVYGEML AEAAREEQTR SLSSRPSKRR
     KLSEEPSSGI GLDFNLFGPD DNVADANVAA NNVPENLQQT VYDEFEGSEE SDVEFEDVDL
     DAPPEEPDVG AHSRQSRFEL DLSKTNLDAP RRTTPRRKPV SPAERKLRLE VHKAHLLCLL
     GHLSCRNRWC ESPSVQSILK PLVPKKVTSL LHVDDSKPQY QRNHSFMKGI EEVCALWKLQ
     WEVTVRGMRR AHWKDDVDVL KESDDAEDLI DFDDFRAAAH SRSGSRDLGA QLCCALLRSI
     AVDARLVCSL QVLPFSGVAK GQSTMKPKPQ YYHAPAQDYT SMGGTTTIMQ SERSISPKKK
     KKIVDSPYPI FWVEAYSPSI ATWIPLDPLV RGTINKPKRG FEPPASDQLN NMTYVIAFED
     DGSAKDVTRR YTEWYHAKTR KQRVESTKGG EEWWDRTMRT FRKPFEEDRD VIEDVFLNKR
     TQNEPMPRNV QDFKGHPVYV LERHLRMNEV IHPKHEVGKV SAGPSKNAKL ESVYRRRDVH
     LCRTADAWYR RGKDVNEGEQ PLKRVLSKKR HNHPLAEPGE DLDDGADADG RQEGAPLYAD
     YQTSFYQPPP VVDGKVPKNG YGNLDVYVPT MIPAGAVHIR HPLAAQSARV LGIDYADAVT
     GFEFKGRQGT AVIDGVVVSL DMTSAVISVI EGLESQASDE AEAERSRVVL GLWKRWLQAL
     RVRERVHRDY GNSDEESGDK ADEYDDEDYE EKTEDDGGGF VPEAAEQGQP SAKFPGADTE
     AVLARLKPID QLLPPEVIHQ DIVIVRSPHK MASPWSEERG NQSRSNAISL SRGEYEGDDG
     DEGQGGGFIV EDEDGANGTE SLFEDDDANS GGGFILEDEG ELNEGTNTNP QMTLGQPQLH
     KRRPTPDANA SENGGGFLHG DEKDTDPTLP YHVVSMDSRQ EIHRKTEFQQ DTTGSQQESP
     VSPSGTATAD AADPSMNNTT AEPLREKPEA ETEPKALPNP EILDPEVGTK RIETDSNNSP
     LSQTSLLSHD PDEEDAEPDW IVDSLG
//
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