ID A0A0D2NGB9_GOSRA Unreviewed; 1049 AA.
AC A0A0D2NGB9;
DT 29-APR-2015, integrated into UniProtKB/TrEMBL.
DT 29-APR-2015, sequence version 1.
DT 27-MAR-2024, entry version 31.
DE RecName: Full=JmjC domain-containing protein {ECO:0008006|Google:ProtNLM};
GN ORFNames=B456_005G211300 {ECO:0000313|EMBL:KJB31857.1};
OS Gossypium raimondii (New World cotton).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium.
OX NCBI_TaxID=29730 {ECO:0000313|EMBL:KJB31857.1, ECO:0000313|Proteomes:UP000032304};
RN [1] {ECO:0000313|EMBL:KJB31857.1, ECO:0000313|Proteomes:UP000032304}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RX PubMed=23257886; DOI=10.1038/nature11798;
RA Paterson A.H., Wendel J.F., Gundlach H., Guo H., Jenkins J., Jin D.,
RA Llewellyn D., Showmaker K.C., Shu S., Udall J., Yoo M.J., Byers R.,
RA Chen W., Doron-Faigenboim A., Duke M.V., Gong L., Grimwood J., Grover C.,
RA Grupp K., Hu G., Lee T.H., Li J., Lin L., Liu T., Marler B.S., Page J.T.,
RA Roberts A.W., Romanel E., Sanders W.S., Szadkowski E., Tan X., Tang H.,
RA Xu C., Wang J., Wang Z., Zhang D., Zhang L., Ashrafi H., Bedon F.,
RA Bowers J.E., Brubaker C.L., Chee P.W., Das S., Gingle A.R., Haigler C.H.,
RA Harker D., Hoffmann L.V., Hovav R., Jones D.C., Lemke C., Mansoor S.,
RA ur Rahman M., Rainville L.N., Rambani A., Reddy U.K., Rong J.K.,
RA Saranga Y., Scheffler B.E., Scheffler J.A., Stelly D.M., Triplett B.A.,
RA Van Deynze A., Vaslin M.F., Waghmare V.N., Walford S.A., Wright R.J.,
RA Zaki E.A., Zhang T., Dennis E.S., Mayer K.F., Peterson D.G., Rokhsar D.S.,
RA Wang X., Schmutz J.;
RT "Repeated polyploidization of Gossypium genomes and the evolution of
RT spinnable cotton fibres.";
RL Nature 492:423-427(2012).
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|ARBA:ARBA00004123}.
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DR EMBL; CM001744; KJB31857.1; -; Genomic_DNA.
DR AlphaFoldDB; A0A0D2NGB9; -.
DR EnsemblPlants; KJB31857; KJB31857; B456_005G211300.
DR Gramene; KJB31857; KJB31857; B456_005G211300.
DR eggNOG; KOG1356; Eukaryota.
DR OMA; YCRTSIA; -.
DR Proteomes; UP000032304; Chromosome 5.
DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
DR GO; GO:0003677; F:DNA binding; IEA:InterPro.
DR GO; GO:0032454; F:histone H3K9 demethylase activity; IEA:InterPro.
DR CDD; cd02208; cupin_RmlC-like; 1.
DR Gene3D; 2.60.120.650; Cupin; 1.
DR InterPro; IPR017956; AT_hook_DNA-bd_motif.
DR InterPro; IPR045109; JHDM2-like.
DR InterPro; IPR003347; JmjC_dom.
DR InterPro; IPR018866; Znf-4CXXC_R1.
DR InterPro; IPR001841; Znf_RING.
DR PANTHER; PTHR12549; JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN; 1.
DR PANTHER; PTHR12549:SF72; LYSINE-SPECIFIC DEMETHYLASE JMJ25-LIKE; 1.
DR Pfam; PF02178; AT_hook; 2.
DR Pfam; PF02373; JmjC; 1.
DR Pfam; PF10497; zf-4CXXC_R1; 1.
DR PRINTS; PR00929; ATHOOK.
DR SMART; SM00384; AT_hook; 2.
DR SMART; SM00558; JmjC; 1.
DR SUPFAM; SSF51197; Clavaminate synthase-like; 1.
DR PROSITE; PS51184; JMJC; 1.
DR PROSITE; PS50089; ZF_RING_2; 1.
PE 4: Predicted;
KW Metal-binding {ECO:0000256|PROSITE-ProRule:PRU00175};
KW Nucleus {ECO:0000256|ARBA:ARBA00023242};
KW Reference proteome {ECO:0000313|Proteomes:UP000032304};
KW Transcription {ECO:0000256|ARBA:ARBA00023163};
KW Transcription regulation {ECO:0000256|ARBA:ARBA00023015};
KW Zinc {ECO:0000256|PROSITE-ProRule:PRU00175};
KW Zinc-finger {ECO:0000256|PROSITE-ProRule:PRU00175}.
FT DOMAIN 276..323
FT /note="RING-type"
FT /evidence="ECO:0000259|PROSITE:PS50089"
FT DOMAIN 726..1006
FT /note="JmjC"
FT /evidence="ECO:0000259|PROSITE:PS51184"
FT REGION 1..100
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 154..258
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 473..500
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 807..826
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 837..886
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 10..91
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 154..180
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 217..231
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 243..258
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 478..500
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 839..853
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 854..886
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 1049 AA; 119631 MW; FC09774E4225CFC3 CRC64;
MGSQENSGFA EHQVEERNGE DNRDMGRDKA REMEGKEERI EGKENKSGDS EGDTLNKPNK
RGTKKEVTVP SKRGKKEERG EEGKCLDFVE ESGENVDESG VQLKGKNTLV SVENLEVANG
EGIATMKEDV DMDSAGSKRR LRTIVKKVSY AEVQENEDDE FVPKKRGRGR PKKEVVVKSE
GQEDGFISEN GDNTVHAKKR GRGRPRKQVT ESVAIEGTDT DKSRRRAKNG SLGMNESENL
VKPLRVPGEE EEPVPGSKRK RDVKWITIAK EDRLTCHQCK RNDKGRVVRC KLCNCKRYCI
PCIKNWYPKM SEDEIADACP VCRENCNCKA CLRTTGLLKK LEETLNPKFS GGEEVQHTRY
VLQTLLPYIK QFSEEQIKEK VIEAKINGVA AEQIKLKQAI CTENERVYCN YCRTSIADFH
RSCPDCNYDL CLTCCREIRD GDLRGGQREV IMEYPDMSFE YLHGELQCSM PSKVGNALKP
SKEEDSPEET NSKEHNAATS EWKVNENGTI RCPPKDLGGC GNGLLELRCM FGEHAVIELT
RKAEEITKAL NLVHVLEVSN KQCPCYNSMG EADIDNNKLR KAASREDATD NYLYCPKAKD
IESGDLKHFQ KHWANGEPVI VSNVLENASG LSWEPMVMWR AFRQVTNKKS DHQLEVKALH
CLDWSEVVVN IHQFFKGYTD GRFDSKSWPQ ILKLKDWPPS NEFKNLLPRH HAEFLCCLPF
KEYTHPQSGL LNIATKLPKK SLKPDMGPKS YIAYGVAQEL GRGDSVTRLH CDMSDALDAI
NKLKRKHNLQ DQQELFGRIS KVDRNKPDDG WFDVSPYDRQ SNDRAGDQEC KVIVEQEGQD
GYSSLSGNNS VREFEMQESR KEKMDEEECG ENRRSSETSG NEIEEVEAHE GGAVWDIFRR
QDVPKLQDYL KKHFREFRYV HCCPVSQVFH PLHDQSFYLT MDHKAKLKQE YGIEPWTFVQ
KLGEAVLIPA GCPHQVRNIK SCIKVALDFV SPENVGECVR LTEEFRLLPR DHREKEDKLE
VKKMTVHAVQ QAVKYLDPNA EVELAYKVN
//
