ID A0A0D2PPV7_GOSRA Unreviewed; 328 AA.
AC A0A0D2PPV7;
DT 29-APR-2015, integrated into UniProtKB/TrEMBL.
DT 29-APR-2015, sequence version 1.
DT 24-JAN-2024, entry version 32.
DE RecName: Full=CCHC-type domain-containing protein {ECO:0000259|PROSITE:PS50158};
GN ORFNames=B456_001G110800 {ECO:0000313|EMBL:KJB08884.1}, Gorai_020989
GN {ECO:0000313|EMBL:MBA0578715.1};
OS Gossypium raimondii (New World cotton).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium.
OX NCBI_TaxID=29730 {ECO:0000313|EMBL:KJB08884.1, ECO:0000313|Proteomes:UP000032304};
RN [1] {ECO:0000313|EMBL:KJB08884.1, ECO:0000313|Proteomes:UP000032304}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RX PubMed=23257886; DOI=10.1038/nature11798;
RA Paterson A.H., Wendel J.F., Gundlach H., Guo H., Jenkins J., Jin D.,
RA Llewellyn D., Showmaker K.C., Shu S., Udall J., Yoo M.J., Byers R.,
RA Chen W., Doron-Faigenboim A., Duke M.V., Gong L., Grimwood J., Grover C.,
RA Grupp K., Hu G., Lee T.H., Li J., Lin L., Liu T., Marler B.S., Page J.T.,
RA Roberts A.W., Romanel E., Sanders W.S., Szadkowski E., Tan X., Tang H.,
RA Xu C., Wang J., Wang Z., Zhang D., Zhang L., Ashrafi H., Bedon F.,
RA Bowers J.E., Brubaker C.L., Chee P.W., Das S., Gingle A.R., Haigler C.H.,
RA Harker D., Hoffmann L.V., Hovav R., Jones D.C., Lemke C., Mansoor S.,
RA ur Rahman M., Rainville L.N., Rambani A., Reddy U.K., Rong J.K.,
RA Saranga Y., Scheffler B.E., Scheffler J.A., Stelly D.M., Triplett B.A.,
RA Van Deynze A., Vaslin M.F., Waghmare V.N., Walford S.A., Wright R.J.,
RA Zaki E.A., Zhang T., Dennis E.S., Mayer K.F., Peterson D.G., Rokhsar D.S.,
RA Wang X., Schmutz J.;
RT "Repeated polyploidization of Gossypium genomes and the evolution of
RT spinnable cotton fibres.";
RL Nature 492:423-427(2012).
RN [2] {ECO:0000313|EMBL:MBA0578715.1, ECO:0000313|Proteomes:UP000593578}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=8 {ECO:0000313|EMBL:MBA0578715.1};
RC TISSUE=Leaf {ECO:0000313|EMBL:MBA0578715.1};
RX PubMed=30476109;
RA Grover C.E., Arick M.A. 2nd, Thrash A., Conover J.L., Sanders W.S.,
RA Peterson D.G., Frelichowski J.E., Scheffler J.A., Scheffler B.E.,
RA Wendel J.F.;
RT "Insights into the Evolution of the New World Diploid Cottons (Gossypium,
RT Subgenus Houzingenia) Based on Genome Sequencing.";
RL Genome Biol. Evol. 11:53-71(2019).
RN [3] {ECO:0000313|EMBL:MBA0578715.1}
RP NUCLEOTIDE SEQUENCE.
RC STRAIN=8 {ECO:0000313|EMBL:MBA0578715.1};
RC TISSUE=Leaf {ECO:0000313|EMBL:MBA0578715.1};
RA Grover C.E., Arick M.A. II, Thrash A., Conover J.L., Sanders W.S.,
RA Peterson D.G., Scheffler J.A., Scheffler B.E., Wendel J.F.;
RL Submitted (APR-2020) to the EMBL/GenBank/DDBJ databases.
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DR EMBL; CM001740; KJB08882.1; -; Genomic_DNA.
DR EMBL; CM001740; KJB08883.1; -; Genomic_DNA.
DR EMBL; CM001740; KJB08884.1; -; Genomic_DNA.
DR EMBL; CM001740; KJB08885.1; -; Genomic_DNA.
DR EMBL; CM001740; KJB08886.1; -; Genomic_DNA.
DR EMBL; JABEZZ010000001; MBA0578715.1; -; Genomic_DNA.
DR RefSeq; XP_012474860.1; XM_012619406.1.
DR RefSeq; XP_012474868.1; XM_012619414.1.
DR RefSeq; XP_012474873.1; XM_012619419.1.
DR AlphaFoldDB; A0A0D2PPV7; -.
DR STRING; 29730.A0A0D2PPV7; -.
DR EnsemblPlants; KJB08882; KJB08882; B456_001G110800.
DR EnsemblPlants; KJB08883; KJB08883; B456_001G110800.
DR EnsemblPlants; KJB08884; KJB08884; B456_001G110800.
DR EnsemblPlants; KJB08885; KJB08885; B456_001G110800.
DR EnsemblPlants; KJB08886; KJB08886; B456_001G110800.
DR GeneID; 105791363; -.
DR Gramene; KJB08882; KJB08882; B456_001G110800.
DR Gramene; KJB08883; KJB08883; B456_001G110800.
DR Gramene; KJB08884; KJB08884; B456_001G110800.
DR Gramene; KJB08885; KJB08885; B456_001G110800.
DR Gramene; KJB08886; KJB08886; B456_001G110800.
DR KEGG; gra:105791363; -.
DR eggNOG; KOG2985; Eukaryota.
DR OMA; RTHAIWK; -.
DR OrthoDB; 1388040at2759; -.
DR Proteomes; UP000032304; Chromosome 1.
DR Proteomes; UP000593578; Unassembled WGS sequence.
DR GO; GO:0003676; F:nucleic acid binding; IEA:InterPro.
DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro.
DR InterPro; IPR001878; Znf_CCHC.
DR PANTHER; PTHR31437:SF1; PROTEIN SREK1IP1; 1.
DR PANTHER; PTHR31437; SREK1IP1 FAMILY MEMBER; 1.
DR Pfam; PF13917; zf-CCHC_3; 1.
DR PROSITE; PS50158; ZF_CCHC; 1.
PE 4: Predicted;
KW Metal-binding {ECO:0000256|PROSITE-ProRule:PRU00047};
KW Reference proteome {ECO:0000313|Proteomes:UP000032304};
KW Zinc {ECO:0000256|PROSITE-ProRule:PRU00047};
KW Zinc-finger {ECO:0000256|PROSITE-ProRule:PRU00047}.
FT DOMAIN 87..102
FT /note="CCHC-type"
FT /evidence="ECO:0000259|PROSITE:PS50158"
FT REGION 121..328
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 140..155
FT /note="Acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 156..170
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 182..200
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 213..228
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 235..249
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 250..265
FT /note="Basic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 266..286
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 328 AA; 37076 MW; 4BC287FEFAEE455A CRC64;
MPATAGRVRM PANNRVHSSA ALQTHGIWQS AIGYDPYAPN KDDSKNSSSQ MTAAAEPDGE
NAYASFQGLL ALARITGSNA DEARGACKKC GRVGHLTFQC KNFVSLKESK EKDPEAIQAA
VLNGLDKLKG GKLNGKKEME SEEEEDEESE SSDSDVDSDI ERIIAERSGK KVSRKGKKSS
KKKKMSDEDD SSESDYGERK KKRGRSKKRS SRKRGISDSD DEDEGRRKRR KEKRKKRDDS
SDEDDDHHRR HRKRKSRKEK RRRRSHRHSD DSESSDVSDD PGKRHRRKSQ RHESLSGSDV
SGSDDSRVGR GAKRSEKRSR KRHHEDDE
//
