ID A0A0D2QDG5_GOSRA Unreviewed; 843 AA.
AC A0A0D2QDG5;
DT 29-APR-2015, integrated into UniProtKB/TrEMBL.
DT 29-APR-2015, sequence version 1.
DT 27-MAR-2024, entry version 41.
DE RecName: Full=Homeobox domain-containing protein {ECO:0008006|Google:ProtNLM};
GN ORFNames=B456_009G107500 {ECO:0000313|EMBL:KJB56132.1};
OS Gossypium raimondii (New World cotton).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium.
OX NCBI_TaxID=29730 {ECO:0000313|EMBL:KJB56132.1, ECO:0000313|Proteomes:UP000032304};
RN [1] {ECO:0000313|EMBL:KJB56132.1, ECO:0000313|Proteomes:UP000032304}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RX PubMed=23257886; DOI=10.1038/nature11798;
RA Paterson A.H., Wendel J.F., Gundlach H., Guo H., Jenkins J., Jin D.,
RA Llewellyn D., Showmaker K.C., Shu S., Udall J., Yoo M.J., Byers R.,
RA Chen W., Doron-Faigenboim A., Duke M.V., Gong L., Grimwood J., Grover C.,
RA Grupp K., Hu G., Lee T.H., Li J., Lin L., Liu T., Marler B.S., Page J.T.,
RA Roberts A.W., Romanel E., Sanders W.S., Szadkowski E., Tan X., Tang H.,
RA Xu C., Wang J., Wang Z., Zhang D., Zhang L., Ashrafi H., Bedon F.,
RA Bowers J.E., Brubaker C.L., Chee P.W., Das S., Gingle A.R., Haigler C.H.,
RA Harker D., Hoffmann L.V., Hovav R., Jones D.C., Lemke C., Mansoor S.,
RA ur Rahman M., Rainville L.N., Rambani A., Reddy U.K., Rong J.K.,
RA Saranga Y., Scheffler B.E., Scheffler J.A., Stelly D.M., Triplett B.A.,
RA Van Deynze A., Vaslin M.F., Waghmare V.N., Walford S.A., Wright R.J.,
RA Zaki E.A., Zhang T., Dennis E.S., Mayer K.F., Peterson D.G., Rokhsar D.S.,
RA Wang X., Schmutz J.;
RT "Repeated polyploidization of Gossypium genomes and the evolution of
RT spinnable cotton fibres.";
RL Nature 492:423-427(2012).
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|ARBA:ARBA00004123,
CC ECO:0000256|PROSITE-ProRule:PRU00108, ECO:0000256|RuleBase:RU000682}.
CC -!- SIMILARITY: Belongs to the HD-ZIP homeobox family. Class III subfamily.
CC {ECO:0000256|ARBA:ARBA00010338}.
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DR EMBL; CM001748; KJB56132.1; -; Genomic_DNA.
DR RefSeq; XP_012443272.1; XM_012587818.1.
DR AlphaFoldDB; A0A0D2QDG5; -.
DR STRING; 29730.A0A0D2QDG5; -.
DR EnsemblPlants; KJB56132; KJB56132; B456_009G107500.
DR GeneID; 105768079; -.
DR Gramene; KJB56132; KJB56132; B456_009G107500.
DR KEGG; gra:105768079; -.
DR eggNOG; ENOG502QRJM; Eukaryota.
DR OMA; IPLAHTV; -.
DR OrthoDB; 454859at2759; -.
DR Proteomes; UP000032304; Chromosome 9.
DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule.
DR GO; GO:0003700; F:DNA-binding transcription factor activity; IEA:InterPro.
DR GO; GO:0008289; F:lipid binding; IEA:InterPro.
DR GO; GO:0030154; P:cell differentiation; IEA:UniProtKB-KW.
DR CDD; cd14686; bZIP; 1.
DR CDD; cd00086; homeodomain; 1.
DR CDD; cd08875; START_ArGLABRA2_like; 1.
DR Gene3D; 3.30.530.20; -; 1.
DR Gene3D; 1.10.10.60; Homeodomain-like; 1.
DR InterPro; IPR044830; HD-Zip_III.
DR InterPro; IPR009057; Homeobox-like_sf.
DR InterPro; IPR001356; Homeobox_dom.
DR InterPro; IPR013978; MEKHLA.
DR InterPro; IPR023393; START-like_dom_sf.
DR InterPro; IPR002913; START_lipid-bd_dom.
DR PANTHER; PTHR45950; HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14; 1.
DR PANTHER; PTHR45950:SF10; HOMEOBOX-LEUCINE ZIPPER PROTEIN REVOLUTA; 1.
DR Pfam; PF00046; Homeodomain; 1.
DR Pfam; PF08670; MEKHLA; 1.
DR Pfam; PF01852; START; 1.
DR SMART; SM00389; HOX; 1.
DR SMART; SM00234; START; 1.
DR SUPFAM; SSF55961; Bet v1-like; 1.
DR SUPFAM; SSF46689; Homeodomain-like; 1.
DR PROSITE; PS50071; HOMEOBOX_2; 1.
DR PROSITE; PS50848; START; 1.
PE 3: Inferred from homology;
KW Coiled coil {ECO:0000256|ARBA:ARBA00023054, ECO:0000256|SAM:Coils};
KW Differentiation {ECO:0000256|ARBA:ARBA00022782};
KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00108,
KW ECO:0000256|RuleBase:RU000682};
KW Homeobox {ECO:0000256|PROSITE-ProRule:PRU00108,
KW ECO:0000256|RuleBase:RU000682};
KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00108,
KW ECO:0000256|RuleBase:RU000682};
KW Reference proteome {ECO:0000313|Proteomes:UP000032304}.
FT DOMAIN 28..84
FT /note="Homeobox"
FT /evidence="ECO:0000259|PROSITE:PS50071"
FT DOMAIN 154..382
FT /note="START"
FT /evidence="ECO:0000259|PROSITE:PS50848"
FT DNA_BIND 30..85
FT /note="Homeobox"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00108"
FT COILED 94..121
FT /evidence="ECO:0000256|SAM:Coils"
SQ SEQUENCE 843 AA; 92307 MW; EA63291E6C517289 CRC64;
MAMALAQHRE SSSDSSINKH LDGGKYVRYT AEQVEALERV YAECPKPSSL RRQQLIRECP
ILSNIEPKQI KVWFQNRRCR EKQKKESSRL QTVNRKLTAM NKLLMEENDR LQKQVSQMVC
ENGYMKQQLH TVNTSAADAN CDSLGTTPQH SLRDTNSPAG LLSIAEETLA EFLSKATGTA
VDWVQMPGMK PGPDSVGIFT ISQSCSGVAA RACGLVSLEP VKIAEILKDR PSWSRDCRNL
EVFTMFPAGN GGTIELVYAQ TFAPTTLAPA RDFWTLRYTT TLENGSLVVC ERSLSGSGAG
PSAAAAAQFV RAEVLPSGYL IRPCEGGGSI IHIVDHLNLE AWSVPEVLRP LYESSKVIAQ
KMTIAALRYI RQIAQETSGE VVYSLGRQPA VLRTFSQRLS RGFNDAINGF NDDGWSIMNC
DGTEDVIIAI NSIKSFSSTS NPANALSFLG GVLCAKASML LQNIAPAVLV RFLREHRSEW
ADFNVDAYCA ASLKAGTNAY PGMRPTRFTG SQIIMPLGHT IEHEELLEVI RLEGHSFVQE
DAFVSRDIHL LQICSGIDEN AVGACSELVF APIDEMFPDD APLLPSGFRV IPLDSKSSDT
QDSLTTNRTL DLTSSLEVGP ATNHAAGDTS SCRNTRSVLT IAFQFPFESN LRDNVATMAR
QYVRSVISSV QRVAMAISPS GLNPAVGSKL SPGSPEALTL AHWICRSYSY HLGAELLRSE
SLGGDSILKN LWQHQDAILC CSLKSQPVFI FANQAGLDML ETTLVALQDI TLDKLFDESG
RKALCSDFGK LMQQGYACLP AGICMSTMGR HVSYEQAFAW KVLEADESTV HCLAFSFVNW
SFV
//
