ID A0A0D2QG10_GOSRA Unreviewed; 803 AA.
AC A0A0D2QG10;
DT 29-APR-2015, integrated into UniProtKB/TrEMBL.
DT 29-APR-2015, sequence version 1.
DT 27-MAR-2024, entry version 36.
DE RecName: Full=DYW domain-containing protein {ECO:0000259|Pfam:PF14432};
GN ORFNames=B456_002G200700 {ECO:0000313|EMBL:KJB15871.1}, Gorai_023299
GN {ECO:0000313|EMBL:MBA0581111.1};
OS Gossypium raimondii (New World cotton).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium.
OX NCBI_TaxID=29730 {ECO:0000313|EMBL:KJB15871.1, ECO:0000313|Proteomes:UP000032304};
RN [1] {ECO:0000313|EMBL:KJB15871.1, ECO:0000313|Proteomes:UP000032304}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RX PubMed=23257886; DOI=10.1038/nature11798;
RA Paterson A.H., Wendel J.F., Gundlach H., Guo H., Jenkins J., Jin D.,
RA Llewellyn D., Showmaker K.C., Shu S., Udall J., Yoo M.J., Byers R.,
RA Chen W., Doron-Faigenboim A., Duke M.V., Gong L., Grimwood J., Grover C.,
RA Grupp K., Hu G., Lee T.H., Li J., Lin L., Liu T., Marler B.S., Page J.T.,
RA Roberts A.W., Romanel E., Sanders W.S., Szadkowski E., Tan X., Tang H.,
RA Xu C., Wang J., Wang Z., Zhang D., Zhang L., Ashrafi H., Bedon F.,
RA Bowers J.E., Brubaker C.L., Chee P.W., Das S., Gingle A.R., Haigler C.H.,
RA Harker D., Hoffmann L.V., Hovav R., Jones D.C., Lemke C., Mansoor S.,
RA ur Rahman M., Rainville L.N., Rambani A., Reddy U.K., Rong J.K.,
RA Saranga Y., Scheffler B.E., Scheffler J.A., Stelly D.M., Triplett B.A.,
RA Van Deynze A., Vaslin M.F., Waghmare V.N., Walford S.A., Wright R.J.,
RA Zaki E.A., Zhang T., Dennis E.S., Mayer K.F., Peterson D.G., Rokhsar D.S.,
RA Wang X., Schmutz J.;
RT "Repeated polyploidization of Gossypium genomes and the evolution of
RT spinnable cotton fibres.";
RL Nature 492:423-427(2012).
RN [2] {ECO:0000313|EMBL:MBA0581111.1, ECO:0000313|Proteomes:UP000593578}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=8 {ECO:0000313|EMBL:MBA0581111.1};
RC TISSUE=Leaf {ECO:0000313|EMBL:MBA0581111.1};
RX PubMed=30476109;
RA Grover C.E., Arick M.A. 2nd, Thrash A., Conover J.L., Sanders W.S.,
RA Peterson D.G., Frelichowski J.E., Scheffler J.A., Scheffler B.E.,
RA Wendel J.F.;
RT "Insights into the Evolution of the New World Diploid Cottons (Gossypium,
RT Subgenus Houzingenia) Based on Genome Sequencing.";
RL Genome Biol. Evol. 11:53-71(2019).
RN [3] {ECO:0000313|EMBL:MBA0581111.1}
RP NUCLEOTIDE SEQUENCE.
RC STRAIN=8 {ECO:0000313|EMBL:MBA0581111.1};
RC TISSUE=Leaf {ECO:0000313|EMBL:MBA0581111.1};
RA Grover C.E., Arick M.A. II, Thrash A., Conover J.L., Sanders W.S.,
RA Peterson D.G., Scheffler J.A., Scheffler B.E., Wendel J.F.;
RL Submitted (APR-2020) to the EMBL/GenBank/DDBJ databases.
CC -!- SIMILARITY: Belongs to the PPR family. PCMP-H subfamily.
CC {ECO:0000256|ARBA:ARBA00006643}.
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DR EMBL; CM001741; KJB15871.1; -; Genomic_DNA.
DR EMBL; JABEZZ010000002; MBA0581111.1; -; Genomic_DNA.
DR RefSeq; XP_012467607.1; XM_012612153.1.
DR AlphaFoldDB; A0A0D2QG10; -.
DR EnsemblPlants; KJB15871; KJB15871; B456_002G200700.
DR GeneID; 105785943; -.
DR Gramene; KJB15871; KJB15871; B456_002G200700.
DR KEGG; gra:105785943; -.
DR eggNOG; KOG4197; Eukaryota.
DR OMA; VKCCARL; -.
DR OrthoDB; 444797at2759; -.
DR Proteomes; UP000032304; Chromosome 2.
DR Proteomes; UP000593578; Unassembled WGS sequence.
DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro.
DR Gene3D; 1.25.40.10; Tetratricopeptide repeat domain; 6.
DR InterPro; IPR032867; DYW_dom.
DR InterPro; IPR046848; E_motif.
DR InterPro; IPR002885; Pentatricopeptide_rpt.
DR InterPro; IPR011990; TPR-like_helical_dom_sf.
DR NCBIfam; TIGR00756; PPR; 5.
DR PANTHER; PTHR47928:SF190; OS04G0110500 PROTEIN; 1.
DR PANTHER; PTHR47928; REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED; 1.
DR Pfam; PF14432; DYW_deaminase; 1.
DR Pfam; PF20431; E_motif; 1.
DR Pfam; PF01535; PPR; 4.
DR Pfam; PF13041; PPR_2; 3.
DR SUPFAM; SSF48452; TPR-like; 1.
DR PROSITE; PS51375; PPR; 5.
PE 3: Inferred from homology;
KW Reference proteome {ECO:0000313|Proteomes:UP000032304};
KW Repeat {ECO:0000256|ARBA:ARBA00022737}.
FT REPEAT 88..122
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT REPEAT 158..192
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT REPEAT 392..426
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT REPEAT 494..528
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT REPEAT 529..559
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT DOMAIN 729..803
FT /note="DYW"
FT /evidence="ECO:0000259|Pfam:PF14432"
SQ SEQUENCE 803 AA; 90018 MW; 94ED15F685468F9D CRC64;
MAATLLLHYF NAPRIVSLNH SEPPKTNPFA VTRPRFSKPN QLQTTHSKAS NILAEPTHFT
LIDALCSFID SGSIENALYL FEEMNHSDTF TWNIIIKGLA HKGLFKEAVS YFRRMEFEGA
RPDKFTYPFV LKACAGLLSL KEGEKVHAKL IKVGLDLDVY VCNSLISMYM KVGCVELGEN
VFKEMPVRDL VSWNSIISGY QFVGDGLSSL VCLREMVLIG IRPDKFSFIS GLGACSIEGC
QRNGKEIHCQ VIKNGFEMDF MVETSLIDMY GKCGNAVYAE RVFDMIVNKN TVAWNAMVAG
YVSNACFSES FSCVKKMQEV GKLRPDGITM INLLPACAQM GALLMGKSIH ASAIRKGFLP
HVVLETALVD FYGRCGTLKL AKHVFTRINE KNLASWNAMI AAYVQNGQYS EALDMFQDIW
YKSVKPDVIT FASILPAYAE LTSLSEGRQI HAVITKLGLT SSNTIISNTI IYLYAKCGDL
QTARRCFDGM FCKDVVSWNT IIMAYAIHGF GRISIQLFHE MIEHGIKPNK STFVSLLSSC
SISGMVDEGW EYFNSMKRDY GIDPGIEHFG CMLDLIGRTG NLDLAKRFIE EMPLVPTARI
WGSLLAASRK ANDIELAEVA AKHALSLEHD NTGCYILLSN MYAEAGRWED VEKIKTLMIQ
EGLAKTMGCS TVETDYKIHR FVDQDRSNAQ MSMVNDVMDI ISKMTADKED AYAHRITKLK
RTDLTRKRPN LPENHSVRWA ISFGLISTEL GSPVLVRKNI RICEDCHNVA KKISKITKRE
IIVGDSKVFH HFQDGNCFCG DYW
//
