ID A0A0D2QQU3_GOSRA Unreviewed; 553 AA.
AC A0A0D2QQU3;
DT 29-APR-2015, integrated into UniProtKB/TrEMBL.
DT 29-APR-2015, sequence version 1.
DT 27-MAR-2024, entry version 33.
DE RecName: Full=Pentacotripeptide-repeat region of PRORP domain-containing protein {ECO:0000259|Pfam:PF17177};
GN ORFNames=B456_003G095900 {ECO:0000313|EMBL:KJB19336.1}, Gorai_024453
GN {ECO:0000313|EMBL:MBA0582302.1};
OS Gossypium raimondii (New World cotton).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium.
OX NCBI_TaxID=29730 {ECO:0000313|EMBL:KJB19336.1, ECO:0000313|Proteomes:UP000032304};
RN [1] {ECO:0000313|EMBL:KJB19336.1, ECO:0000313|Proteomes:UP000032304}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RX PubMed=23257886; DOI=10.1038/nature11798;
RA Paterson A.H., Wendel J.F., Gundlach H., Guo H., Jenkins J., Jin D.,
RA Llewellyn D., Showmaker K.C., Shu S., Udall J., Yoo M.J., Byers R.,
RA Chen W., Doron-Faigenboim A., Duke M.V., Gong L., Grimwood J., Grover C.,
RA Grupp K., Hu G., Lee T.H., Li J., Lin L., Liu T., Marler B.S., Page J.T.,
RA Roberts A.W., Romanel E., Sanders W.S., Szadkowski E., Tan X., Tang H.,
RA Xu C., Wang J., Wang Z., Zhang D., Zhang L., Ashrafi H., Bedon F.,
RA Bowers J.E., Brubaker C.L., Chee P.W., Das S., Gingle A.R., Haigler C.H.,
RA Harker D., Hoffmann L.V., Hovav R., Jones D.C., Lemke C., Mansoor S.,
RA ur Rahman M., Rainville L.N., Rambani A., Reddy U.K., Rong J.K.,
RA Saranga Y., Scheffler B.E., Scheffler J.A., Stelly D.M., Triplett B.A.,
RA Van Deynze A., Vaslin M.F., Waghmare V.N., Walford S.A., Wright R.J.,
RA Zaki E.A., Zhang T., Dennis E.S., Mayer K.F., Peterson D.G., Rokhsar D.S.,
RA Wang X., Schmutz J.;
RT "Repeated polyploidization of Gossypium genomes and the evolution of
RT spinnable cotton fibres.";
RL Nature 492:423-427(2012).
RN [2] {ECO:0000313|EMBL:MBA0582302.1, ECO:0000313|Proteomes:UP000593578}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=8 {ECO:0000313|EMBL:MBA0582302.1};
RC TISSUE=Leaf {ECO:0000313|EMBL:MBA0582302.1};
RX PubMed=30476109;
RA Grover C.E., Arick M.A. 2nd, Thrash A., Conover J.L., Sanders W.S.,
RA Peterson D.G., Frelichowski J.E., Scheffler J.A., Scheffler B.E.,
RA Wendel J.F.;
RT "Insights into the Evolution of the New World Diploid Cottons (Gossypium,
RT Subgenus Houzingenia) Based on Genome Sequencing.";
RL Genome Biol. Evol. 11:53-71(2019).
RN [3] {ECO:0000313|EMBL:MBA0582302.1}
RP NUCLEOTIDE SEQUENCE.
RC STRAIN=8 {ECO:0000313|EMBL:MBA0582302.1};
RC TISSUE=Leaf {ECO:0000313|EMBL:MBA0582302.1};
RA Grover C.E., Arick M.A. II, Thrash A., Conover J.L., Sanders W.S.,
RA Peterson D.G., Scheffler J.A., Scheffler B.E., Wendel J.F.;
RL Submitted (APR-2020) to the EMBL/GenBank/DDBJ databases.
CC -!- SIMILARITY: Belongs to the PPR family. P subfamily.
CC {ECO:0000256|ARBA:ARBA00007626}.
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DR EMBL; CM001742; KJB19336.1; -; Genomic_DNA.
DR EMBL; JABEZZ010000003; MBA0582302.1; -; Genomic_DNA.
DR RefSeq; XP_012470743.1; XM_012615289.1.
DR AlphaFoldDB; A0A0D2QQU3; -.
DR EnsemblPlants; KJB19336; KJB19336; B456_003G095900.
DR GeneID; 105788403; -.
DR Gramene; KJB19336; KJB19336; B456_003G095900.
DR KEGG; gra:105788403; -.
DR eggNOG; KOG4197; Eukaryota.
DR OMA; RNPKKDC; -.
DR OrthoDB; 1204387at2759; -.
DR Proteomes; UP000032304; Chromosome 3.
DR Proteomes; UP000593578; Unassembled WGS sequence.
DR Gene3D; 1.25.40.10; Tetratricopeptide repeat domain; 4.
DR InterPro; IPR002885; Pentatricopeptide_rpt.
DR InterPro; IPR033443; PPR_long.
DR InterPro; IPR011990; TPR-like_helical_dom_sf.
DR NCBIfam; TIGR00756; PPR; 7.
DR PANTHER; PTHR47934:SF4; OS08G0191900 PROTEIN; 1.
DR PANTHER; PTHR47934; PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN PET309, MITOCHONDRIAL; 1.
DR Pfam; PF01535; PPR; 2.
DR Pfam; PF12854; PPR_1; 1.
DR Pfam; PF13041; PPR_2; 1.
DR Pfam; PF17177; PPR_long; 1.
DR PROSITE; PS51375; PPR; 6.
PE 3: Inferred from homology;
KW Reference proteome {ECO:0000313|Proteomes:UP000032304};
KW Repeat {ECO:0000256|ARBA:ARBA00022737}.
FT REPEAT 271..305
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT REPEAT 306..340
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT REPEAT 341..375
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT DOMAIN 354..508
FT /note="Pentacotripeptide-repeat region of PRORP"
FT /evidence="ECO:0000259|Pfam:PF17177"
FT REPEAT 376..410
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT REPEAT 411..445
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT REPEAT 481..515
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT REGION 38..74
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 553 AA; 62130 MW; 05CB2B289724CE0F CRC64;
MLRKHQTLSL ASSSNPQRNL NVNSLKLFGF SPLFTSTSTS TNPSASPDSS LTSELPDIPS
WVSKQNTGTQ PSGDDDFVIP SLATWIENHP KVRLFPTKKP ETPVEKITKI LKCPYPSPEI
VVQALNASDL SVSDVSVDQL LKRFSNSWIS AYGVFIWAKT QSGYTHTPEL YNLMVDGLGK
AKMFDLLLDL IEEMKQLKGY INLDTIFKVM RRLANARRFS EAIEVFRRIE ELGVEKDVMA
LNGLLDALVK GDGVEHACEA FVELKECIPL NSNTFNILVH GFCKARRLSD ARKILNEMNE
QGFQPCTVSF TCFIEAYCRE KDFRNVDAIL DEMKEKGCRP NAVTYTIIMH ARGKAGEIGK
ALEVYDMMKK DSCLPDSSFY GSLIFILSKA GRLKDADEIF EDMVKQGVKP NALTYNTMIS
SSCGHSLEEK ALKLLKRMEE DSCKPNISTY APLLKMCCRK KRMKVLNFLL SHMLNNDVSI
DHTTYTLLVR GLCNSGKLEQ ACAFFEEMVL KGMIPKGSIC TMLVEKLEKE DMIEAKQKVQ
ELVPNVKEPK ITV
//
