ID A0A0D2R3A6_GOSRA Unreviewed; 871 AA.
AC A0A0D2R3A6;
DT 29-APR-2015, integrated into UniProtKB/TrEMBL.
DT 29-APR-2015, sequence version 1.
DT 27-MAR-2024, entry version 29.
DE RecName: Full=LisH domain-containing protein {ECO:0008006|Google:ProtNLM};
GN ORFNames=B456_010G067800 {ECO:0000313|EMBL:KJB64847.1};
OS Gossypium raimondii (New World cotton).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium.
OX NCBI_TaxID=29730 {ECO:0000313|EMBL:KJB64847.1, ECO:0000313|Proteomes:UP000032304};
RN [1] {ECO:0000313|EMBL:KJB64847.1, ECO:0000313|Proteomes:UP000032304}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RX PubMed=23257886; DOI=10.1038/nature11798;
RA Paterson A.H., Wendel J.F., Gundlach H., Guo H., Jenkins J., Jin D.,
RA Llewellyn D., Showmaker K.C., Shu S., Udall J., Yoo M.J., Byers R.,
RA Chen W., Doron-Faigenboim A., Duke M.V., Gong L., Grimwood J., Grover C.,
RA Grupp K., Hu G., Lee T.H., Li J., Lin L., Liu T., Marler B.S., Page J.T.,
RA Roberts A.W., Romanel E., Sanders W.S., Szadkowski E., Tan X., Tang H.,
RA Xu C., Wang J., Wang Z., Zhang D., Zhang L., Ashrafi H., Bedon F.,
RA Bowers J.E., Brubaker C.L., Chee P.W., Das S., Gingle A.R., Haigler C.H.,
RA Harker D., Hoffmann L.V., Hovav R., Jones D.C., Lemke C., Mansoor S.,
RA ur Rahman M., Rainville L.N., Rambani A., Reddy U.K., Rong J.K.,
RA Saranga Y., Scheffler B.E., Scheffler J.A., Stelly D.M., Triplett B.A.,
RA Van Deynze A., Vaslin M.F., Waghmare V.N., Walford S.A., Wright R.J.,
RA Zaki E.A., Zhang T., Dennis E.S., Mayer K.F., Peterson D.G., Rokhsar D.S.,
RA Wang X., Schmutz J.;
RT "Repeated polyploidization of Gossypium genomes and the evolution of
RT spinnable cotton fibres.";
RL Nature 492:423-427(2012).
CC ---------------------------------------------------------------------------
CC Copyrighted by the UniProt Consortium, see https://www.uniprot.org/terms
CC Distributed under the Creative Commons Attribution (CC BY 4.0) License
CC ---------------------------------------------------------------------------
DR EMBL; CM001749; KJB64847.1; -; Genomic_DNA.
DR AlphaFoldDB; A0A0D2R3A6; -.
DR EnsemblPlants; KJB64847; KJB64847; B456_010G067800.
DR Gramene; KJB64847; KJB64847; B456_010G067800.
DR Proteomes; UP000032304; Chromosome 10.
DR GO; GO:0016020; C:membrane; IEA:UniProtKB-KW.
DR CDD; cd00200; WD40; 1.
DR Gene3D; 2.130.10.10; YVTN repeat-like/Quinoprotein amine dehydrogenase; 2.
DR InterPro; IPR006594; LisH.
DR InterPro; IPR015943; WD40/YVTN_repeat-like_dom_sf.
DR InterPro; IPR019775; WD40_repeat_CS.
DR InterPro; IPR036322; WD40_repeat_dom_sf.
DR InterPro; IPR001680; WD40_rpt.
DR PANTHER; PTHR45093:SF5; LISH DOMAIN-CONTAINING PROTEIN; 1.
DR PANTHER; PTHR45093; TRANSCRIPTION ACTIVATOR MSS11; 1.
DR Pfam; PF08513; LisH; 1.
DR Pfam; PF00400; WD40; 4.
DR SMART; SM00320; WD40; 7.
DR SUPFAM; SSF50978; WD40 repeat-like; 1.
DR PROSITE; PS50896; LISH; 1.
DR PROSITE; PS00678; WD_REPEATS_1; 1.
DR PROSITE; PS50082; WD_REPEATS_2; 4.
DR PROSITE; PS50294; WD_REPEATS_REGION; 3.
PE 4: Predicted;
KW Membrane {ECO:0000256|SAM:Phobius};
KW Reference proteome {ECO:0000313|Proteomes:UP000032304};
KW Repeat {ECO:0000256|ARBA:ARBA00022737};
KW Transcription {ECO:0000256|ARBA:ARBA00023163};
KW Transcription regulation {ECO:0000256|ARBA:ARBA00023015};
KW Transmembrane {ECO:0000256|SAM:Phobius};
KW Transmembrane helix {ECO:0000256|SAM:Phobius};
KW WD repeat {ECO:0000256|ARBA:ARBA00022574, ECO:0000256|PROSITE-
KW ProRule:PRU00221}.
FT TRANSMEM 6..26
FT /note="Helical"
FT /evidence="ECO:0000256|SAM:Phobius"
FT REPEAT 598..629
FT /note="WD"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00221"
FT REPEAT 640..681
FT /note="WD"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00221"
FT REPEAT 683..725
FT /note="WD"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00221"
FT REPEAT 839..871
FT /note="WD"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00221"
FT REGION 153..179
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 417..524
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 427..524
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 871 AA; 96136 MW; EAC678CE43D0E00D CRC64;
MTINEVSILF IDFFFFFLFK FIFWAFCFFE NASEFKSWLV EISSIIWLDV YIYDYLMKRK
LNATAKAFQA EGKVSTDPVA IDAPGGFLFE WWSVFWDIFI ARTNEKHSEA AASYIETQMV
KARELQQQQH YQKPQQTQMQ QLLLQRHAQQ QQHQQQQQQQ QRQQQQQPQH QQQQQQREGT
QLINDAASGL VGEPLMKESS ASAIAATRKM YDETFRFPRQ RDSLDDAAAK QLGDNLGQLL
DPNQATMMKA ASVVGQPPGQ TLHGTPGNIS GSLQPMQNRG QQISVPTQDS RSEINPMLTP
RAAGTDGSLI GVHGSNQAGG NLTLKGWPLT GLDQLRSGLL QQQKTLIQTS QPFSQLQLHQ
QLLLQAQQNL SSPSANDFES RKMRMLLNNQ IMGLGKDVPL NSLGDVVPKV GSPMQIGCPV
LPRGDSDISV KQQQLHQNNQ QSQQIGQNPL SSQQSQNSNH QLQQQDKMAS KNQVGRKRKQ
PGSSSGPVNS SGTANTTGPA PSSPSSPSTH TPGDAISMPT LPHNSGSSKS LLMFGSDGLG
SLTSASNQLA DIDRFVDDGS LDDNVESFLS HDDPEPRDRV GRCSDVSKGL TFMEVQLIPA
STSKVECCHF SADGKLLATG GHDKKAVLWC TESFALKSTL EEHSQWITDV RFSSSMSRLA
TSSADETVRV WDADNPAYSL RTFVGHSTTV TSLDFHPTKD DLICSCDNNS EIRYWSIKNG
SCAGVLKGGA TQIRFQPRVG RFLAAATDNS VSLLDVEAQV CRAKLQGHKS VIHSVCWDAT
GEVWTVGSSG KGECVHELNR TGNKFNTCVF HPSYSSLLVI GCYETLELWN MLENKIMTRH
AHENLVSALA ASNSTRMVAS ASHDKCVKLW K
//