ID A0A0D2RAY3_GOSRA Unreviewed; 999 AA.
AC A0A0D2RAY3;
DT 29-APR-2015, integrated into UniProtKB/TrEMBL.
DT 29-APR-2015, sequence version 1.
DT 24-JAN-2024, entry version 30.
DE RecName: Full=XS domain-containing protein {ECO:0008006|Google:ProtNLM};
GN ORFNames=B456_010G201300 {ECO:0000313|EMBL:KJB67632.1};
OS Gossypium raimondii (New World cotton).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium.
OX NCBI_TaxID=29730 {ECO:0000313|EMBL:KJB67632.1, ECO:0000313|Proteomes:UP000032304};
RN [1] {ECO:0000313|EMBL:KJB67632.1, ECO:0000313|Proteomes:UP000032304}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RX PubMed=23257886; DOI=10.1038/nature11798;
RA Paterson A.H., Wendel J.F., Gundlach H., Guo H., Jenkins J., Jin D.,
RA Llewellyn D., Showmaker K.C., Shu S., Udall J., Yoo M.J., Byers R.,
RA Chen W., Doron-Faigenboim A., Duke M.V., Gong L., Grimwood J., Grover C.,
RA Grupp K., Hu G., Lee T.H., Li J., Lin L., Liu T., Marler B.S., Page J.T.,
RA Roberts A.W., Romanel E., Sanders W.S., Szadkowski E., Tan X., Tang H.,
RA Xu C., Wang J., Wang Z., Zhang D., Zhang L., Ashrafi H., Bedon F.,
RA Bowers J.E., Brubaker C.L., Chee P.W., Das S., Gingle A.R., Haigler C.H.,
RA Harker D., Hoffmann L.V., Hovav R., Jones D.C., Lemke C., Mansoor S.,
RA ur Rahman M., Rainville L.N., Rambani A., Reddy U.K., Rong J.K.,
RA Saranga Y., Scheffler B.E., Scheffler J.A., Stelly D.M., Triplett B.A.,
RA Van Deynze A., Vaslin M.F., Waghmare V.N., Walford S.A., Wright R.J.,
RA Zaki E.A., Zhang T., Dennis E.S., Mayer K.F., Peterson D.G., Rokhsar D.S.,
RA Wang X., Schmutz J.;
RT "Repeated polyploidization of Gossypium genomes and the evolution of
RT spinnable cotton fibres.";
RL Nature 492:423-427(2012).
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DR EMBL; CM001749; KJB67632.1; -; Genomic_DNA.
DR RefSeq; XP_012450114.1; XM_012594660.1.
DR AlphaFoldDB; A0A0D2RAY3; -.
DR STRING; 29730.A0A0D2RAY3; -.
DR EnsemblPlants; KJB67632; KJB67632; B456_010G201300.
DR GeneID; 105773052; -.
DR Gramene; KJB67632; KJB67632; B456_010G201300.
DR KEGG; gra:105773052; -.
DR eggNOG; ENOG502QRE8; Eukaryota.
DR OrthoDB; 600346at2759; -.
DR Proteomes; UP000032304; Chromosome 10.
DR GO; GO:0080188; P:gene silencing by RNA-directed DNA methylation; IEA:InterPro.
DR CDD; cd12266; RRM_like_XS; 2.
DR Gene3D; 3.30.70.2890; XS domain; 2.
DR InterPro; IPR045177; FDM1-5/IDN2.
DR InterPro; IPR005379; FDM1-5/IDN2_XH.
DR InterPro; IPR005380; XS_domain.
DR InterPro; IPR038588; XS_domain_sf.
DR InterPro; IPR005381; Znf-XS_domain.
DR PANTHER; PTHR21596:SF65; PROTEIN INVOLVED IN DE NOVO 2-RELATED; 1.
DR PANTHER; PTHR21596; RIBONUCLEASE P SUBUNIT P38; 1.
DR Pfam; PF03469; XH; 1.
DR Pfam; PF03468; XS; 2.
DR Pfam; PF03470; zf-XS; 3.
PE 4: Predicted;
KW Coiled coil {ECO:0000256|ARBA:ARBA00023054, ECO:0000256|SAM:Coils};
KW Reference proteome {ECO:0000313|Proteomes:UP000032304};
KW RNA-mediated gene silencing {ECO:0000256|ARBA:ARBA00023158}.
FT DOMAIN 28..71
FT /note="Zinc finger-XS"
FT /evidence="ECO:0000259|Pfam:PF03470"
FT DOMAIN 100..212
FT /note="XS"
FT /evidence="ECO:0000259|Pfam:PF03468"
FT DOMAIN 317..359
FT /note="Zinc finger-XS"
FT /evidence="ECO:0000259|Pfam:PF03470"
FT DOMAIN 405..446
FT /note="Zinc finger-XS"
FT /evidence="ECO:0000259|Pfam:PF03470"
FT DOMAIN 475..586
FT /note="XS"
FT /evidence="ECO:0000259|Pfam:PF03468"
FT DOMAIN 864..995
FT /note="Factor of DNA methylation 1-5/IDN2"
FT /evidence="ECO:0000259|Pfam:PF03469"
FT COILED 647..836
FT /evidence="ECO:0000256|SAM:Coils"
SQ SEQUENCE 999 AA; 114456 MW; 434A1772FBC40CD5 CRC64;
MGKYEDRCYE TLKKGRCIVK VSDKTYICPY CPPKKKQYYR YEDLLQHASG VGDSSSAKRR
PIVKASHRAL AKYLKKNHVP VVSSSKLSAQ EDTPSGHDDD EKIVWPWTGI VVNIPIQKSE
NGQSVGKSGS KLKDELIRRG FNPITVHPLR NYHGHSGTAV VEFQKDWQGL HHALSFENAY
KADHHGKKDW SANTEVKYGL YAWVARADDY KSSSIIGEHL RQTRDLKTIP KLMEEEARKQ
DRLVSYLTNI TGTKNKIDLY TAVQKCPCFN VSLPMDISSI DGSNITESEM GMYVDRSYEK
LRNGKYIVKV SGETYSCPFC PQKKKPNYRY MDLVQHASAV ANSSSARRTP IVKANHLALS
KYLEKDLAPL VSSLKPVTQE DPLSGCDHNE NGKHIVKASD ETYTCPYCPE KKIYRYLDLV
QHASGVGNSS SARRTPIMKA NHLALAKYLE KGLVPLVSSL KPAAQEDPLS GCDHDEKIVW
PWTGIVVNIP TRKSEDGRTV GESGSKLRDE LIRRGFNPIR VRPLWNNCDH SGIAVVEFHK
DWSGLHNALS FENAYEADHR GKKDWGANND VKYGLYAWIA RADDHKSSSI IGEHLRKTSD
IKTISKLMEE EARKQDRLVS YLTNILETKN KHLKEMEAMC SVTSESLKVL MEEKDNLLQA
YNKEINKTQQ SARLHYQKVF SDHEKVKSQL ESHRKDLELR EVELEKREAL IEGERKKLAE
ELEENVVQNS ALRLAALEQK RADENLMQLA EDQKRQKEEL HNRIIQLEKQ LDQKQALELE
IEQLRGSMNV IRELGDEDDD IVLTIIEASF KELREKEREL EDLEALNQTL IVSERKSNNE
LQEARKELIN GLKEISSCAN IGVKRMGELD NKPFLEAMKR RYNEELAEER AVELCSLWEE
YLKDPNWHPF KRIKLEGEEY QEVIDNEDEK LKDLKDEMGN EVYKSVTSVI NEINEYNPSG
RYATSELWNY GEGRRASLQE GVEFLLNLWN ATKGKRGMT
//
